PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_18233A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YA

Protein Properties

Length: 217aa MW: 23481.9 Da PI: 8.8597

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_18233A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.2	1.2e-32	110	166	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF Oropetium_20150105_18233A 110 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 166 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-35	108	169	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.652	109	169	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.5E-27	111	166	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	112	134	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	114	134	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	143	166	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MTSVVESVSG DHRAEDQHQQ NKQKQAQPED QQEASVTSSG SQTMVGTPSA DYVATYAPHD 60 MVPAMGQFAY PNVDPYYGSL YAAYGGQPMM HPPLVGIPPA GLPLPTDAIE EPVYVNAKQY 120 NAILRRRQSR AKAESERKLI KGRKPYLHES RHQHALKRAR GAGGRFLNSK SEDKEENSDS 180 GHKEKQNGVV PCNNGQPSSP TSPNGATSAN QASNQK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-22	109	181	1	73	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_18233A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443549.1	1e-130	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	2e-44	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0A9GEL2	1e-130	A0A0A9GEL2_ARUDO; Uncharacterized protein
STRING	Pavir.Ca02834.1.p	1e-130	(Panicum virgatum)
STRING	Pavir.J06031.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-39	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_18233A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]