PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18232A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92465.5 Da    PI: 7.3393
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18232AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182481457
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                 ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Oropetium_20150105_18232A 24 YVRYTPEQVEALERVYNECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                               6789****************************************************97 PP
2START157.88.6e-501733802204
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +ae++++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi
  Oropetium_20150105_18232A 173 IAEKTLAEFMSKATGTAVNWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRASWYRDCRHVDVLHVI 255
                                688999****************************************************.8888888888*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                 +g  g+++l++++++a+++l+   d++++Ry+  l +g++vi+++S++  +  p    +++++RaellpSg+li+p+++g+s 
  Oropetium_20150105_18232A 256 PTGngGTIELIYMQTYAPTTLAQpHDYWTLRYTSGLDDGSLVICERSLTKSTGGPCrpnNPNFIRAELLPSGYLIRPCEGGGSM 339
                                ******************999877**************************998887777************************* PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                + +v+hvdl++r+ +++lr+l++s ++ ++k++va++++ +
  Oropetium_20150105_18232A 340 IYIVDHVDLDARSAPEVLRPLYESPRILAQKMTVAAMRHIR 380
                                ************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3861882IPR001356Homeobox domain
SMARTSM003891.9E-152086IPR001356Homeobox domain
SuperFamilySSF466891.07E-162284IPR009057Homeodomain-like
CDDcd000861.31E-162383No hitNo description
PfamPF000465.0E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182581IPR009057Homeodomain-like
CDDcd146862.94E-575114No hitNo description
PROSITE profilePS5084826.025163363IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-20169351IPR023393START-like domain
SMARTSM002348.2E-38172382IPR002913START domain
SuperFamilySSF559619.2E-34173381No hitNo description
PfamPF018521.8E-47173380IPR002913START domain
PfamPF086701.7E-44699841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAAVASRERR LSPASAPQVD AGKYVRYTPE QVEALERVYN ECPKPTSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKESSRLQS VNRKLSATNK LLMEENDLLQ KQLSRLVREN  120
GFMRKRLPKP SVATTDTSCE SVVTNGQQHL QQNSHVPNPP QRDENNPARL IAIAEKTLAE  180
FMSKATGTAV NWVQMVGMKP GPDSIGIIAV SHNCSGVAAR ACGLVSLEPT KVAEILKDRA  240
SWYRDCRHVD VLHVIPTGNG GTIELIYMQT YAPTTLAQPH DYWTLRYTSG LDDGSLVICE  300
RSLTKSTGGP CRPNNPNFIR AELLPSGYLI RPCEGGGSMI YIVDHVDLDA RSAPEVLRPL  360
YESPRILAQK MTVAAMRHIR QISVESSGEI LYGAGRQPAV LRALSQRLSR GFNDAVSGFP  420
DDGWSFMITE GSQDITISVK SFPNKPAGFH ASTSPLFSAI GGGIMCAKAS MLIQNVPPAL  480
LVRFLREHRS QWADPAADAY STASLWTSPY AGGGFIGNQA ILPIAETIDN EESLEIVRFE  540
GSGFGHDEVL PRDMLLLQLC SGFDESAPGA CAQLIFAPID ESFTDDTPLL PSGFRVIQLD  600
GKEDVSSATR TLDLASALEV GSGGALHASR DTTSVRSVLT IAFQFSFENH LRESVAVMAK  660
QYVRSVTTSV QRVAMAISPS RIGSQIEMKH SPGSPEAETL ARWISRSYRV HTGAEIRWSD  720
NKDAESPLKL LWSHNDAILC CSLKASPMLV FANRAGLDIL ETSLINIQDM PLETVLSDEA  780
QKALFLELPK VMNQGFAYLP GGACKSSLGR QASYEQAVVW KVLGDDGTPH CLALMLVNWT  840
FT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18232A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443548.10.0homeobox-leucine zipper protein HOX33
RefseqXP_004963232.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLC5YRY30.0C5YRY3_SORBI; Uncharacterized protein
TrEMBLK3Z3T30.0K3Z3T3_SETIT; Uncharacterized protein
STRINGSi021201m0.0(Setaria italica)
STRINGSb08g021350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]