PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18220A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LSD | ||||||||
Protein Properties | Length: 167aa MW: 17436.6 Da PI: 8.4407 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.7 | 8.1e-13 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr lL YPrGApsV+Ca+C+ Oropetium_20150105_18220A 7 CHGCRSLLLYPRGAPSVCCAVCHS 30 **********************96 PP | |||||||
2 | zf-LSD1 | 41.3 | 2.4e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+ +A+ VRC++CdtV Oropetium_20150105_18220A 46 CGGCQTLLMYTHNATTVRCSCCDTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 46.9 | 4.5e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L+YP+GApsV+Ca+C+++ Oropetium_20150105_18220A 84 CGQCLTVLMYPYGAPSVKCAICNFI 108 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.6E-11 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.6E-11 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.1E-12 | 44 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.3E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.0E-11 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.0E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHS MTSVPPLGME MARLICGGCQ TLLMYTHNAT 60 TVRCSCCDTV NLVRQVSSIA HVNCGQCLTV LMYPYGAPSV KCAICNFITN VGVTAVRPLP 120 PALPAPPSPT NKSKNITVVV ENPMTVDEKG KLVGNVVLGV TTGGKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18220A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805781.1 | 9e-97 | protein LOL2-like isoform X2 | ||||
Swissprot | Q2QMB3 | 6e-88 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A0A9MMP5 | 1e-97 | A0A0A9MMP5_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g021100.1 | 3e-93 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 4e-52 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18220A |
Publications ? help Back to Top | |||
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