PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18218A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 316aa    MW: 33774.6 Da    PI: 8.9553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18218AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53141421128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lppGfrFhP+deel+++yL +kv+gk  ++ ++  + +vd++kvePwdLp++++ ++kewyfFs +d+kyatg+r+nrat sgy
  Oropetium_20150105_18218A  14 LPPGFRFHPRDEELICDYLVPKVSGKVgFSGHHPpMVDVDLNKVEPWDLPATASVGSKEWYFFSLKDRKYATGQRTNRATVSGY 97 
                                79************************986665556***************8888899*************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wkatgkd+ v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
  Oropetium_20150105_18218A  98 WKATGKDRMVAR-RGALVGMRKTLVFYQGRAPKGKKTEWVMHEYRM 142
                                **********99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-595166IPR003441NAC domain
PROSITE profilePS5100556.50614166IPR003441NAC domain
PfamPF023652.2E-2715142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSVSFLSMV EAALPPGFRF HPRDEELICD YLVPKVSGKV GFSGHHPPMV DVDLNKVEPW  60
DLPATASVGS KEWYFFSLKD RKYATGQRTN RATVSGYWKA TGKDRMVARR GALVGMRKTL  120
VFYQGRAPKG KKTEWVMHEY RMEGPEPSPR TSLKEEDWVL CRVICKKKSA LGGATSKPAR  180
GLTANGHDAA ATTTSPPLPP LMDTTLAQLH AAMNTAGAGA GAIEQVPCFS SFNSIAGNSN  240
NAAAGAQPCY LPMATGSNGM MSYLDSGLPE LGSCYDPLNS DKKLLKAVLS QLGGEVGPGL  300
SPDLAAASST WMNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-53917015172NAC domain-containing protein 19
3swm_B8e-53917015172NAC domain-containing protein 19
3swm_C8e-53917015172NAC domain-containing protein 19
3swm_D8e-53917015172NAC domain-containing protein 19
3swp_A8e-53917015172NAC domain-containing protein 19
3swp_B8e-53917015172NAC domain-containing protein 19
3swp_C8e-53917015172NAC domain-containing protein 19
3swp_D8e-53917015172NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18218A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805880.11e-174NAC domain-containing protein 21/22-like
TrEMBLA0A2T7EJ771e-173A0A2T7EJ77_9POAL; Uncharacterized protein
STRINGBRADI4G02060.11e-156(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-74NAC domain containing protein 1