PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18025A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Dof
Protein Properties Length: 218aa    MW: 23810.2 Da    PI: 9.7282
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18025AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.12.5e-352679255
                     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55
                               ++k+l+cprC s++tkfCy+nny+++qPr+fC++C+ryWt+GG++rnvP+G+ +
  Oropetium_20150105_18025A 26 PDKILPCPRCSSMETKFCYFNNYNVNQPRHFCRSCKRYWTAGGTMRNVPIGAET 79
                               68999**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-261277IPR003851Zinc finger, Dof-type
PfamPF027013.0E-302880IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.4963084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDADPKPDEF KTESDGSGQE KELKRPDKIL PCPRCSSMET KFCYFNNYNV NQPRHFCRSC  60
KRYWTAGGTM RNVPIGAETH PKSYPAGPAL VAPWSPGWSR GTGMTSPKCS TNGMTSKVSL  120
PLPIMMPAPG LSAPAVPFPL VPPLWRGIPG WPTGMWSSPW SANNRSALPS SPPNSSGNTS  180
SKLGKHSREE ILQGEKWKGT NICVPKILRI TDPEDAAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18025A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852921.14e-41PREDICTED: cyclic dof factor 1-like
TrEMBLA0A1D8RJ112e-58A0A1D8RJ11_ELECO; DNA-binding with one finger protein 14 (Fragment)
STRINGGSMUA_Achr6P32240_0019e-49(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.11e-35cycling DOF factor 1