PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17983A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 423aa MW: 46750.3 Da PI: 6.7481 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+t+++ g+ R++k+c++rw +yl Oropetium_20150105_17983A 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E++l++++++ lG++ W+ Ia +++ gRt++++k+ w+ Oropetium_20150105_17983A 67 RGAFSQDEEDLIIELHAVLGNR-WSQIATRLP-GRTDNEIKNLWN 109 89********************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.586 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.41E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.868 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.00E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQDEEDLIIE LHAVLGNRWS QIATRLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKLLS EVDRSKAAPT ISTERTSESS DVDPSSGGAI GSLNHLLSET AQSPELLPVL 180 GKHRKEITSL AHLRVPPKEL FLDQLVPGHD NLPTGRLTGP IPNFPFQQLS CYSNGFGSTN 240 SLWYNQNEAS GSAISTVMPP VSPSTLSTST GLNRSPDNQY SGGTAIQSTQ FHWDTTDPSS 300 SSSRGSSGSN GLGFELQGAS SLLENSVFPW TELATEKNSQ AHLEEELKWP DLLHGAFTET 360 PTTMQNLSQS LYEDVVKAES QFNMEGLCAA WSQNLQPPQH LQVVSDLYDK DLQRMSLSFE 420 SI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17983A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457686.1 | 0.0 | transcription factor MYB61 isoform X1 | ||||
TrEMBL | C5XHY7 | 0.0 | C5XHY7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g011640.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2310 | 37 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-89 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17983A |