PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17972A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 706aa    MW: 77248 Da    PI: 7.9659
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17972AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-181472357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Oropetium_20150105_17972A 14 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaNVDPKQIKVWFQNRRCREKQ 72
                               6789*****************************************************97 PP
2START552.5e-18206271139204
                                -TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                 ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s+++ ++k+ +a+l++++
  Oropetium_20150105_17972A 206 VQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLR 271
                                5789**********************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.337973IPR001356Homeobox domain
SMARTSM003891.2E-141177IPR001356Homeobox domain
PfamPF000463.2E-161472IPR001356Homeobox domain
CDDcd000862.48E-151474No hitNo description
SuperFamilySSF466891.92E-161575IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-181672IPR009057Homeodomain-like
CDDcd146864.30E-666105No hitNo description
Gene3DG3DSA:3.30.530.201.9E-6166248IPR023393START-like domain
SuperFamilySSF559611.1E-9200273No hitNo description
PROSITE profilePS5084811.862201273IPR002913START domain
PfamPF018522.2E-15206271IPR002913START domain
PfamPF086702.8E-14575624IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MVTAKEAAAM DASKYVRYTP EQVEALERLY YECPKPSSLR RQQLVRDCPV LANVDPKQIK  60
VWFQNRRCRE KQRKESSRLQ ALNRKLTAMN KLLMEENDRL QKQVSHLVYE NGYYRQQTQS  120
AGLATTDTSC ESVVTSGQQN VATAAAAPPP AQPRDASPAG LVRIPLESLP SRMAALVSLR  180
GLAVLSAWSL QKSLSSKLGG PSMPLVQPFI RGEMLPSGFL IRPSDGGGSV IHIVDHMDLE  240
PWSVPEVVRP LYESSAMVAQ KISMAALRYL RQLAHEDTQS VITGWGRQPA ALRALSQKLT  300
RGYNEALNGL ADDGWSVIES DGVDDVCISV NSSPNKVINC NTTFNNGLPI VSSSVLCAKA  360
SMLLQDVSPP SLLQFMREHR SQWADSNLDA FFASAMKPSF CNLPMSRLGG FSGQVILPLA  420
HTFDPEEVSS YMYNGVDENT VGTCSELIFA PIDASFSDDS PLLPSGFRII PIDSPLGSSS  480
PNCTLDLAST LEVGTPQSRM TRNGSVKASC ASSKAVMTIA FQFTFESHLQ DSVATMARQY  540
VRSIIQSVQR IALALSSSRP RTLFLNYPLI TLVLCDDQGF ACIPGGLCVS SLGRPVSYEK  600
ALAWKVLDDV NNAHCICFMF VNWSQRGGDL AGGRHGPDSR GSCHSTLTAS IQSMRHRPSK  660
STTEPKVEEE EPRAAPREGW APTMNAAPSF VQCHRNRQPR VQEER*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17972A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343900.10.0homeobox-leucine zipper protein ATHB-15 isoform X3
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLK3XEG60.0K3XEG6_SETIT; Uncharacterized protein
STRINGPavir.J31448.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.31e-143HD-ZIP family protein