PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17958A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 283aa    MW: 31862.3 Da    PI: 8.5827
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17958AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.45.8e-31108157150
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                krien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Oropetium_20150105_17958A 108 KRIENPTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 157
                                79***********************************************8 PP
2K-box71.33e-2415722433100
                      K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                 ++R ++G+ ++ +sl++L+qLe +Lek+++kiR++Knell+++++++qk+e el+++n +Lr+k++e
  Oropetium_20150105_17958A 157 ANHRTIVGDAVHAMSLRDLKQLEGKLEKGITKIRARKNELLYAEVDYMQKREMELHSDNIYLRNKVAE 224
                                589**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-41100159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.856100160IPR002100Transcription factor, MADS-box
CDDcd002658.80E-41101158No hitNo description
SuperFamilySSF554551.44E-29101160IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-33102122IPR002100Transcription factor, MADS-box
PROSITE patternPS003500102156IPR002100Transcription factor, MADS-box
PfamPF003199.1E-27109156IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-33122137IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.772136228IPR002487Transcription factor, K-box
PRINTSPR004049.3E-33137158IPR002100Transcription factor, MADS-box
PfamPF014861.7E-17157222IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDWEGTARRA MGIVGHSLQL LLLTAPPLHA FPFPHHLSLI PLASFLSSCS FRLLSYYPLS  60
LSGSHSSPIW PDDLSCGLSK VTEQPTPANS GPSAGSDNKP GRGKIEIKRI ENPTNRQVTF  120
CKRRNGLLKK AYELSVLCDA EVALIVFSSR GRLYEYANHR TIVGDAVHAM SLRDLKQLEG  180
KLEKGITKIR ARKNELLYAE VDYMQKREME LHSDNIYLRN KVAENEREHE QQMSMQIAAA  240
STSEYDHVIP SYDSRNFLQV NVMQQQQQQY SHQPQPTTLQ LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-19101158158Myocyte-specific enhancer factor 2A
3mu6_B1e-19101158158Myocyte-specific enhancer factor 2A
3mu6_C1e-19101158158Myocyte-specific enhancer factor 2A
3mu6_D1e-19101158158Myocyte-specific enhancer factor 2A
5f28_A2e-19101157258MEF2C
5f28_B2e-19101157258MEF2C
5f28_C2e-19101157258MEF2C
5f28_D2e-19101157258MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17958A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306379e-68AJ430637.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m23 gene).
GenBankEU9608109e-68EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds.
GenBankKT1887749e-68KT188774.1 Triticum urartu WAG-2a MADS box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816640.11e-102MADS-box transcription factor 3 isoform X3
SwissprotQ407048e-91MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0A8XZ731e-107A0A0A8XZ73_ARUDO; Uncharacterized protein
STRINGPavir.Ea00226.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.24e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]