PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17951A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

BES1

Protein Properties

Length: 298aa MW: 31127.8 Da PI: 6.4127

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17951A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	122.9	4.2e-38	1	114	34	149
DUF822 34 RaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkssalaspvesysaspkss 117 Ra+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkg kp+e+++a+g+s s sp ss+q +sp++sy+asp+ss Oropetium_20150105_17951A 1 RAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGNKPPERMDAIGCSVSPSPVSSYQ--------PSPRASYNASPTSS 76 9*************************************************************........89999999999999 PP DUF822 118 sfpspssldsislasa......asllpvlsvlslvsss 149 sfps +s+ +++ ++ + +lp+l++ s+ ++s Oropetium_20150105_17951A 77 SFPSGASSPFLPPTDIsngidgNPILPWLKTFSNGTAS 114 99999888887766555667778899999988876666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.0E-39	1	108	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
RAHGGYKLPK HCDNNEVLKA LCNEAGWVVE PDGTTYRKGN KPPERMDAIG CSVSPSPVSS 60 YQPSPRASYN ASPTSSSFPS GASSPFLPPT DISNGIDGNP ILPWLKTFSN GTASKKHPLL 120 PPLLIHGGSI SAPVTPPLSS PTARTPRMKT DWDESAVQPP WHGTHSPSIV NSTPPSPGRS 180 TVPDPAWLAG IQIASTSPSS PTFSLVSTNP FSVFKEAIPV GNSSRMCTPG QSGTCSPAIP 240 GMPGHPDVHM MEAVSDEFAF GSSTNGAQQA AGLVRAWEGE MIHEDSGSDD LDVTLKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-16	1	42	401	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-16	1	42	401	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-16	1	42	401	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-16	1	42	401	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17951A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817932.1	0.0	protein BZR1 homolog 2
Swissprot	Q0JPT4	1e-163	BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBL	A0A2S3HYR9	1e-180	A0A2S3HYR9_9POAL; Uncharacterized protein
STRING	Pavir.Ea00221.1.p	1e-176	(Panicum virgatum)
STRING	Sb03g002480.1	1e-176	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-80	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17951A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]