PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17902A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 560aa MW: 58276.9 Da PI: 6.8904 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.2 | 1.4e-34 | 188 | 280 | 2 | 82 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec. 73 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + + ++s++ Oropetium_20150105_17902A 188 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptatnaaAAAPSSSTh 271 79**************************************************************66555544433111112222 PP TCP 74 eaesssssa 82 a+s ++s+ Oropetium_20150105_17902A 272 PADSAENSD 280 111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-31 | 188 | 280 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.257 | 190 | 248 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MRIAAVGPPP AVAAAEQTGD LDPRRHHRGG GDGAGGGGGG GGAQQETDEQ HHHHHHLLQV 60 HQQVQDQEQQ PVFQLQHLQA AAAVRQQQQR GLSVSSAEYA LLAPMGDAGH HHHGFQPQLL 120 SFAQHPLHQF TAQATATGTA SHSRSRAAAA ATEGGASGEV VPATSHSRVR STGGEIVAVQ 180 GGHIVRSTGR KDRHSKVCTA RGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKN 240 AKDAIDKLEV LPAWQPTATN AAAAAPSSST HPADSAENSD DQAQAITVAH AGFDFPGGAA 300 GGSSSGGGAG FLPASLDSDS IADTIKSFFP MGGTGGGEAS SSAAAAHSSA MGFQNYTPDL 360 LSRTGSHSQE LRLSLQPLPD PMFQHQQEHD RSHGHGGNGS AQQHQALFPG AAGYTFGGGT 420 MWAEQQAAQS QRMVPWNMPD PGGGGGYLFN VSQQAAHMQA ALXXXXXXXX XXXXXXXXXX 480 XXXXXXXXXT TVEPDNPMHH HHQAAGLGSA VSAVGFGPGI GGFSGFRIPG RIQGEEEHNG 540 GGGNGDKPPP SSVSSASHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 195 | 248 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 195 | 248 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17902A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310872.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_021310873.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | A2WM14 | 1e-154 | PCF5_ORYSI; Transcription factor PCF5 | ||||
TrEMBL | A0A3L6R0N0 | 0.0 | A0A3L6R0N0_PANMI; Uncharacterized protein | ||||
STRING | AC205574.3_FGP006 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-52 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17902A |