PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17800A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 826aa MW: 90929.4 Da PI: 4.8205 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.5e-19 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l Oropetium_20150105_17800A 50 KGNWTPEEDAILSRAVQTYQGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.3 | 9.6e-20 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Oropetium_20150105_17800A 102 KGPWSKEEDEIIVQMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.8 | 1.6e-15 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ Oropetium_20150105_17800A 154 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 196 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.677 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-19 | 48 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-17 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 50 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 51 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.27E-15 | 52 | 96 | No hit | No description |
PROSITE profile | PS51294 | 31.92 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-18 | 101 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-16 | 104 | 148 | No hit | No description |
Pfam | PF13921 | 2.6E-18 | 105 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-27 | 110 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 153 | 201 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.815 | 153 | 203 | IPR017930 | Myb domain |
CDD | cd00167 | 3.21E-11 | 156 | 196 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 156 | 203 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 826 aa Download sequence Send to blast |
MTSDKGKVSK KAGQASGVTP PPCEGGASRE PQKQRSLNGR TTGPTRRSTK GNWTPEEDAI 60 LSRAVQTYQG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKY 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP AINKEAWTQE EEITLIHAHR MYGNKWAELT 180 KFLPGRTDNS IKNHWNSSVK KKVDSYMASG LLAQVPCLPL IEYPENLIEC PEYLTEGPEN 240 LIECPENGDS SSVTNRQNIE ESGCSAIGEV ENSSCGSQSS LAEIYCSQVQ NSNVALSCDL 300 QSNVDASKRD AQSSSMSQEA CYISTEGEAS ALPDLCYHVS SSNFDPEKHL EEEFDQRMSL 360 QMDTDEVPSN SLFESNQALC STANQESSLI PHDIAQEMHI SMLPDVSGAE QQLHSISNCL 420 ESDLWHGISL QSLVSGHDII DADLQPNISI SPSLICTDSE VITHSNNSVG DAEQSVKPGC 480 SDDGHGASTM MESITKCGDQ ELIDANEPMA NTETEQLSKE NENTPIEKKD DGGLFYRPPK 540 FPSLDDPFVS CDLVPSEDLP DFSPFGMRQL MRSTMENVPT PLRLWGCPTH DENSDCLLAA 600 ENFGCTPSIM KKRQRDLLSP TPDKRIEKKS GAEKDFVMIG TSHMSSAAYS KNAKSSCKEV 660 ISSKSKPAEL IVEKSSPCIN TSYEYVNLLA DTPGIKRGLE SPSAWKSPLF MQFQGSYLFS 720 PGDRSFDALG LAEQTSVHCN TVVAEARDVL ASGNRIFDEE NKENIDAKKE PGTSKLQPNI 780 IAEARVLDFN ECNTPARTAD RKPGSSLGRS ISSPILSSHN LKSFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17800A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878027.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB3R-4-like | ||||
TrEMBL | A0A0P0Y8F4 | 0.0 | A0A0P0Y8F4_ORYSJ; Os12g0238000 protein | ||||
TrEMBL | A0A446PKJ9 | 0.0 | A0A446PKJ9_TRITD; Uncharacterized protein | ||||
TrEMBL | I1R557 | 0.0 | I1R557_ORYGL; Uncharacterized protein | ||||
STRING | OS12T0238000-00 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA12G0066300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-122 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17800A |