PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_17748A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 351aa MW: 38539.8 Da PI: 9.0406 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3e-06 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Oropetium_20150105_17748A 27 FVCEICGKGFQRDQNLQLHRRGH 49 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Oropetium_20150105_17748A 103 WKCDKCSKKYAVQSDWKAHSKTC 125 58*****************9998 PP | |||||||
3 | zf-C2H2 | 11.9 | 0.00069 | 133 | 151 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Oropetium_20150105_17748A 133 DCGTVFSRRDSFITHRAFC 151 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.23E-7 | 26 | 49 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-6 | 27 | 49 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 27 | 49 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 68 | 98 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 91 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.23E-7 | 98 | 123 | No hit | No description |
SMART | SM00355 | 150 | 103 | 123 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MIQINQADPD AEVIALSPRT LLATNRFVCE ICGKGFQRDQ NLQLHRRGHN LPWKLRQRSG 60 KEPRKRVYVC PEKTCVHHNP TRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA 120 HSKTCGTREY RCDCGTVFSR RDSFITHRAF CDALANETAR HNLSNNDNHH HPPPSSSSTT 180 SSPTPTPTPT PTHCTYXXXX XXXXXXXTGM GMGWLSKEAQ APSLLSSQHQ HANSAADMSA 240 TALLQKAAQI GAVASGGGIC FDEATAEKHQ SAAAGKLDGG LVFGGGSRLQ QNATACSGLA 300 NVPFDDVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA LCSSSLHGWI * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-35 | 99 | 167 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-35 | 99 | 167 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_17748A |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-165 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008655812.1 | 1e-116 | zinc finger protein NUTCRACKER | ||||
Swissprot | Q9FFH3 | 1e-105 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A1D6FHC4 | 1e-114 | A0A1D6FHC4_MAIZE; DNA binding protein, mRNA | ||||
TrEMBL | A0A3L6DLT5 | 1e-114 | A0A3L6DLT5_MAIZE; Zinc finger protein NUTCRACKER | ||||
STRING | GRMZM2G151309_P01 | 1e-115 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-95 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_17748A |
Publications ? help Back to Top | |||
---|---|---|---|
|