PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_17734A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 257aa MW: 28087.6 Da PI: 9.2546 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 72.6 | 5e-23 | 15 | 61 | 4 | 50 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ Oropetium_20150105_17734A 15 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 61 6899*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.665 | 1 | 83 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.8E-21 | 16 | 61 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MASNAPAQPK PTRVSLSYEE ISKLFSLPIA EAASILGVCT SVLKRICRSH GIVRWPYRKL 60 VSGKAGDDPK NSEREKANKE LLEFSKAAKQ KPFSSSGPSA IHTDSAALAK DVSHESATHD 120 ASKGLTDDEL DWGADEGEGE ADGIVTRAEP SAQLCSLRRK AVDDGRKLLN GGARRGQQEF 180 SRLNKRQKVV LAQVFGASLP EEFVSSFAFS RASSALLHWR ERDRKIRFCT LRRADFWNRE 240 DVVDSEAAAA VAKFLD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_17734A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230688.1 | 5e-84 | uncharacterized protein LOC104582530 | ||||
TrEMBL | A0A0Q3ICD5 | 1e-82 | A0A0Q3ICD5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G08600.1 | 2e-83 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6705 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74480.1 | 3e-10 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_17734A |