PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17663A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family BES1
Protein Properties Length: 198aa    MW: 21347.7 Da    PI: 8.8019
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17663AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822205.12.1e-63131382133
                     DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaag 83 
                                g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e+++ +g
  Oropetium_20150105_17663A  13 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPpaERHDPIG 96 
                                789***********************************************************************99999***** PP

                     DUF822  84 ssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa 133
                                +sas sp+ss+q        +sp++sy++sp+sssfps+ s+++i+l  +
  Oropetium_20150105_17663A  97 RSASPSPCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGN 138
                                ************........*********************999987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.2E-6613138IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTSGAGGSGG GLGGTRVPTW RERENNRRRE RRRRAIAAKI FAGLRAYGNY NLPKHCDNNE  60
VLKALCNEAG WTVEPDGTTY RKGCKPPPAE RHDPIGRSAS PSPCSSYQPS PRASYNPSPA  120
SSSFPSSGSS SHITLGGNNF IGGKLPYPMA EESFVEFLIC LILQVSTAST SLLQWWLNQC  180
TSDTSIQLSD SYTSNQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-261690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-261690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-261690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-261690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17663A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813584.12e-61protein BZR1 homolog 3
SwissprotQ5Z9E52e-59BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A2S3HIR05e-60A0A2S3HIR0_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP05e-60A0A2T7DXP0_9POAL; Uncharacterized protein
STRINGPavir.Da00929.1.p2e-60(Panicum virgatum)
STRINGPavir.J12085.1.p2e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.27e-29BES1 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]