PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_17663A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 198aa MW: 21347.7 Da PI: 8.8019 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 205.1 | 2.1e-63 | 13 | 138 | 2 | 133 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaag 83 g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+++ +g Oropetium_20150105_17663A 13 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPpaERHDPIG 96 789***********************************************************************99999***** PP DUF822 84 ssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa 133 +sas sp+ss+q +sp++sy++sp+sssfps+ s+++i+l + Oropetium_20150105_17663A 97 RSASPSPCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGN 138 ************........*********************999987655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.2E-66 | 13 | 138 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MTSGAGGSGG GLGGTRVPTW RERENNRRRE RRRRAIAAKI FAGLRAYGNY NLPKHCDNNE 60 VLKALCNEAG WTVEPDGTTY RKGCKPPPAE RHDPIGRSAS PSPCSSYQPS PRASYNPSPA 120 SSSFPSSGSS SHITLGGNNF IGGKLPYPMA EESFVEFLIC LILQVSTAST SLLQWWLNQC 180 TSDTSIQLSD SYTSNQD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-26 | 16 | 90 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-26 | 16 | 90 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-26 | 16 | 90 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-26 | 16 | 90 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_17663A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813584.1 | 2e-61 | protein BZR1 homolog 3 | ||||
Swissprot | Q5Z9E5 | 2e-59 | BZR3_ORYSJ; Protein BZR1 homolog 3 | ||||
TrEMBL | A0A2S3HIR0 | 5e-60 | A0A2S3HIR0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DXP0 | 5e-60 | A0A2T7DXP0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00929.1.p | 2e-60 | (Panicum virgatum) | ||||
STRING | Pavir.J12085.1.p | 2e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75080.2 | 7e-29 | BES1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_17663A |
Publications ? help Back to Top | |||
---|---|---|---|
|