PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17636A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 263aa    MW: 29878.4 Da    PI: 9.9171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17636AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.3e-212511756128
                        NAM  56 kewyfFskrdkkyatgkrknra...................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgek 118
                                 + +fF++ +k+y+tg+rk+r+                    ++ +W++tgk+++v++ +g++ g+kk+Lv+y   g+++k++k
  Oropetium_20150105_17636A  25 LSRHFFHRPSKAYTTGTRKRRKiqpptatssssapaasqqqRSETRWHKTGKTRPVVV-GGRQRGCKKILVLYtnFGKHRKPQK 107
                                367******************889***********99998755789************.99************5547999999* PP

                        NAM 119 tdWvmheyrl 128
                                t+Wvmh+y+l
  Oropetium_20150105_17636A 108 TNWVMHQYHL 117
                                ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.6681136IPR003441NAC domain
SuperFamilySSF1019411.57E-2221136IPR003441NAC domain
PfamPF023651.2E-728117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MHLTYTRADD IIHSICHAGL TKDGLSRHFF HRPSKAYTTG TRKRRKIQPP TATSSSSAPA  60
ASQQQRSETR WHKTGKTRPV VVGGRQRGCK KILVLYTNFG KHRKPQKTNW VMHQYHLGEA  120
EEEREGELVV SKIFYQTQPR QXXXXXXXXX XXXXXXXXXX XXXXXXXXPS SNASPAFQQG  180
SVVGIDEFNF AQFRSSFEEQ EEGQPHEAQK FDDGRPTSGL EEVIMGCTSR RPKETSGSSK  240
ASSTDWQYHP SFWPSDNQDH HG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17636A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697751e-109EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399939.14e-74NAC domain-containing protein 75 isoform X1
TrEMBLA0A3L6DFR44e-73A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
STRINGGRMZM2G115721_P015e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3177944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-52NAC domain containing protein 75