PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17587A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 363aa    MW: 39237.4 Da    PI: 8.7561
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17587AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17182215134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Oropetium_20150105_17587A 182 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 215
                                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-12175216No hitNo description
SMARTSM004018.4E-16176227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14180215IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268180212IPR000679Zinc finger, GATA-type
CDDcd002022.33E-14181218No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003202.7E-15182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSAIYMSQLS TALPLMEGDH HHHHQDHHHQ GHFQAFTLPK DPPILFPFMI SNSSTTSDDG  60
LNYGSPDHHL MRQQQAMLET QHMIGGPSVA ASVFATPFPT VESIRDDMIE PSSYDPYDLG  120
TLSVGRSVEA GGNWTPPPAK MRITRKASAD PGAGMAVKKP RRRAQAYEDI SSHPNLGVIR  180
VCSDCNTTKT PLWRSGPCGP KSLCNACGIR QRKARRAMMA SGVVPTDNGV KGTTATPSDA  240
MAVHPKVKKE KRADVDRSLP FKKRCKVVQD HAAVPAPXXX XXXXXXXXXX XXXXNVADAG  300
LSRDLVDNIG HISWGRTSPA PAAAATTCNS FRSSPAMPVV HHDEITDAAL LLMTLSCGLV  360
RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17587A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.11e-160putative GATA transcription factor 22
TrEMBLA0A2S3HIY41e-158A0A2S3HIY4_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.18e-20GATA family protein