PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17513A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HB-other | ||||||||
Protein Properties | Length: 332aa MW: 36805.3 Da PI: 4.6863 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 259 | 309 | 3 | 53 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 R ++++ q+e+Le+++ +++ p+ +++ + + ++L+ + + WF rR Oropetium_20150105_17513A 259 ARKRLKRVQVETLERVYLRSKRPTNTMISSIVQVTNLPRKTIVKWFEDRRE 309 588999*******************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.268 | 254 | 314 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-4 | 256 | 318 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-9 | 257 | 311 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.05E-8 | 257 | 308 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 258 | 309 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-7 | 259 | 309 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002229 | Biological Process | defense response to oomycetes | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway | ||||
GO:2000071 | Biological Process | regulation of defense response by callose deposition | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MATVLPLAMP TALSAPRTSI SSTPSPAPLL GTHAHLTLRL RGSPRSVACA LRRRPTKYKT 60 KIQNDDVAAE DGMDDEDEDG ALEALFKQLE EDLENDDLSV DNDDDEISEE DMARFEQELA 120 EAIGDVGGGG ESAGELFSDF EESGIDEKVD RNEQQELKSW QLRRLARALK IGRRKTSIKN 180 LAGELGLDRA LVIELLRNPP PKLLLMSDSL PDETPLKPEV KEVEPSSSTI GDEAEASHAT 240 DINPETELPI HVRSAEWSAR KRLKRVQVET LERVYLRSKR PTNTMISSIV QVTNLPRKTI 300 VKWFEDRREQ DGVPDHRAIF KRSLSGTVAS P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 266 | ARKRLKRVQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17513A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659724.1 | 1e-152 | protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 | ||||
TrEMBL | A0A0A9IZX9 | 1e-159 | A0A0A9IZX9_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G163641_P01 | 1e-152 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10700 | 35 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11270.1 | 1e-57 | overexpressor of cationic peroxidase 3 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17513A |