PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17460A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 468aa    MW: 49822 Da    PI: 8.3875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17460AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3021.5e-92874672374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++l+l+cA+ ++sgdl+ a+++   l   asp +d+  Rla +f++ALa r+   + +l ++ ++ ++s     ++  a+ +f+
  Oropetium_20150105_17460A  87 RDLVLACADLLQSGDLQGARRAAGVLLSAASPCADAADRLAYHFARALAPRVDA-GRGLLASSSAAAAS---RPTSSGAYLAFN 166
                                6789*************************************************9.77777665555555...5677788999** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerL 165
                                ++ P+l+f+hltaNqaIleav+g++r+Hi+D+d+ +G+QWp+Llqa+a+R+    +gpp++RiTg g+    ++++l +tg+rL
  Oropetium_20150105_17460A 167 QIAPFLRFAHLTANQAILEAVDGARRIHILDLDAAHGVQWPPLLQAIADRAdplaGGPPEVRITGAGA----DRDTLLRTGSRL 246
                                **************************************************9888889***********....9*********** PP

                       GRAS 166 akfAeelgvpfefnvl..............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                + fA+++++pf+f++               +  + ++    +L+++p+E+laVn+v+ lh+l       ++e  ++Lk vk + 
  Oropetium_20150105_17460A 247 RAFARSIQLPFHFTPXxxxxxxxxxhheaaAGATASSTPDTALELHPDETLAVNCVMFLHKLG-----GQDELAAFLKWVKAMA 325
                                ***************9999999888765422224444455689*******************8.....2233577********* PP

                       GRAS 236 Pkvvvvveqeadhnse.....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                P vv+++e+e   +++     ++ +r++ a+++y a+f++lea++p+ s+er  vE+e+lgrei+ ++  +g +     + l +
  Oropetium_20150105_17460A 326 PAVVTIAEREPTGGGSlnrvdELPQRVAVAMDHYYAVFEALEATVPPGSRERLLVEQEVLGREIEAALGPSGGR---WWRGLDR 406
                                **********655444455569***********************************************99987...7899*** PP

                       GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                W ++ ++aGF++ pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W+
  Oropetium_20150105_17460A 407 WGAAAHAAGFTARPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 467
                                ************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.84260446IPR005202Transcription factor GRAS
PfamPF035145.0E-9087467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MHATLPLHPL MLLASSHHRG LRPTPPLQHH APVKKKLTRD TIGKTATAML GSLHHSSSSD  60
TDHDSKNGNN NNNNNSGGIL AAVPSTRDLV LACADLLQSG DLQGARRAAG VLLSAASPCA  120
DAADRLAYHF ARALAPRVDA GRGLLASSSA AAASRPTSSG AYLAFNQIAP FLRFAHLTAN  180
QAILEAVDGA RRIHILDLDA AHGVQWPPLL QAIADRADPL AGGPPEVRIT GAGADRDTLL  240
RTGSRLRAFA RSIQLPFHFT PXXXXXXXXX XHHEAAAGAT ASSTPDTALE LHPDETLAVN  300
CVMFLHKLGG QDELAAFLKW VKAMAPAVVT IAEREPTGGG SLNRVDELPQ RVAVAMDHYY  360
AVFEALEATV PPGSRERLLV EQEVLGREIE AALGPSGGRW WRGLDRWGAA AHAAGFTARP  420
LSAFAVSQAR LLLRLHYPSE GYLVQEARGA CFLGWQTRPL LSVSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-5011446731375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17460A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.10.0protein MONOCULM 1-like
RefseqXP_025810769.10.0protein MONOCULM 1-like
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A3L6PE740.0A0A3L6PE74_PANMI; Protein MONOCULM 1-like
STRINGSi008068m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-73GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]