PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17252A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 423aa    MW: 45506 Da    PI: 4.4691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17252AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-092773171055
                                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Oropetium_20150105_17252A 277 KLRREKISDRMKNLQDLVPNS-----NKTDKASMLDEIIDYVKFLQ 317
                                78******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.462267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-13277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6277317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-10277321No hitNo description
Gene3DG3DSA:4.10.280.104.1E-14280326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MENSSGSYFS SWSASENYGF AATSLESFAG EGSMLPSSYF MDARSDHNFE FNKHEQNSSM  60
LINECFKYNA EAGLLSGEIS KDKHPNGLLE LQQLQSSSNQ QSNLVNPGVV QQIPAPGIFH  120
PQLDTPSLAE LPHTLSSSID SNGSDVSAFL TDVHAVSSAS NLCTTYENGS SFMEPANLES  180
FSFGGAQNGA MLSKKGYPDG NFSVFDNAAL AALHDSKEFT SSKVPSFATM KETNLAAGGF  240
KTQKQEQNAV YDAPIPTLIP DNQMAVTATQ GTLMPPKLRR EKISDRMKNL QDLVPNSNKT  300
DKASMLDEII DYVKFLQLQV KVLSMSRLGA PGAVLPVLSE SQIECCSDQP LITPTTAQGL  360
PIVQDSEDTL AFEQEVVKLM ETSITSAMQY LQNKGLCLMP VALASAVSNQ KGMDTSAIAP  420
QR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17252A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0345933e-65BT034593.1 Zea mays full-length cDNA clone ZM_BFb0002C21 mRNA, complete cds.
GenBankHQ8586993e-65HQ858699.1 Zea mays clone UT1155 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438003.10.0transcription factor bHLH66 isoform X2
TrEMBLA0A0A8YDF60.0A0A0A8YDF6_ARUDO; Uncharacterized protein
STRINGSb10g006250.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.16e-43LJRHL1-like 3