PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17235A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 1003aa    MW: 110751 Da    PI: 6.5113
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17235AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.7e-23127228199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +g
  Oropetium_20150105_17235A 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAG 208
                                99*****************************96555444..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++ +l+++++r+
  Oropetium_20150105_17235A 209 DSVLFI--RDEKSQLLLGIRRA 228
                                ******..4567778***9997 PP
2Auxin_resp1232.2e-40253335183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds  rr++Gt++g+ dldpvrW+nS+Wr+L+
  Oropetium_20150105_17235A 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 335
                                79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-44117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-41119242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-20126227No hitNo description
PROSITE profilePS5086312.266127229IPR003340B3 DNA binding domain
PfamPF023624.3E-21127228IPR003340B3 DNA binding domain
SMARTSM010191.4E-23127229IPR003340B3 DNA binding domain
PfamPF065073.6E-35253335IPR010525Auxin response factor
PfamPF023095.0E-9885974IPR033389AUX/IAA domain
PROSITE profilePS5174525.747888981IPR000270PB1 domain
SuperFamilySSF542779.81E-9903967No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MKDPGSGGVT PSPAEGEKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMNK  60
ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN  120
KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR  180
HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL  240
SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML  300
FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STTSERRTRV SIWEIEPVAT  360
PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQNA LFPGLSLVQW  420
MAMQQNPQML TAAAPAVPSQ YLTSNGLGVQ DGMSTANEDP TKRLSMQAQN IGLPNIQAGS  480
KTDHPASTSL AQYQQQSHHV LQQQQQMDQH KLKEQQPSSG QVVSQAQLLS QILQPSSSQL  540
QQLGIPKSPT QRPGLPGLTT VSSLQQPPLN HSPQVQQTAE FQQALLQGQQ PQLQQLSQSE  600
LQLQLLQKIQ QQNLLSQLNP QHQSQLIQQL SQKSQEILQQ QVLQHQFGSA DAMGQQKHLQ  660
QTPLNHIAGS LTTQQLVRSH SALAESEEPS SSTAPSGSRI SPINSLSRAH QGSRNLPEMP  720
ATPQIDHLLQ EIQSKSDNRI KTDMQNTKEA VHVPNRHPAS DQLDASSATS FCLDESPREG  780
FSFPPVCLDS NVHVDPRDNF LIAENVDTLM PDALLSRGMS SGKGISNLPS AQRDHRDVEN  840
ELSSAAFSSQ SFGVPDMSFK PGCSSDVAVT DGGMPSQGLW NSQTQRMRTF TKVQKRGSVG  900
RSIDITRYRG YEDLRHDLAC MFGIQGQLED PYRTDWKLVY VDHENDILLV GDDPWEEFVS  960
CVKSIKILSS VEVQQMSLDG DLGCIPQTQA CSASDDGNAW RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661635645388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17235A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964586.10.0auxin response factor 16 isoform X1
TrEMBLA0A2T7E1Z60.0A0A2T7E1Z6_9POAL; Auxin response factor
STRINGSb10g006440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19