PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17187A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79254.1 Da    PI: 7.8124
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17187AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182475556
                               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                ++t  q++ Le++F+k+++p++++r  L+++lgL+ rq+k+WFqNrR++ k
  Oropetium_20150105_17187A 24 NRHTLRQIQKLEAMFKKCPHPDENQRVALSQELGLEPRQIKFWFQNRRTQIK 75
                               578899******************************************9877 PP

2START133.22.9e-422344583205
                                HHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
                      START   3 aeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 
                                a +a++e+++++la++++Wvk           +   +d+  +k++ ++v      ++e ++a+g+v+m++  lve ++++  +W
  Oropetium_20150105_17187A 234 AARAMDEFIRLVLAGDQVWVKGTtgddewatlDVTGYDDLFSKPDATGVfrapdVKVEGSKAVGHVFMNTLGLVEVFMNTI-KW 316
                                7899*******************99999988888888888899988888999999**************************.** PP

                                -TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS
                      START  73 detla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143
                                   ++    ka t++v+ ++        + l  m+ el +l+p+vp R+f ++R+++ql +g w+ivdvSvd + + +      
  Oropetium_20150105_17187A 317 LDFFPgvvsKAHTVDVLVKDsltetgrsESLIMMSEELHLLTPVVPtREFNILRHCKQLAQGLWAIVDVSVDAKGESS------ 394
                                ********************************************************************9999877754...... PP

                                E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                      START 144 RaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqce 205
                                R ++lpSg+li +++ng skvtwveh+++ +++     l++ lv sg a+ga++wva+lqr c 
  Oropetium_20150105_17187A 395 RYRRLPSGCLIADMPNGCSKVTWVEHMEMTEQTLktNVLYQNLVLSGEAFGARRWVAALQRACD 458
                                5556*****************************987789**********************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-20577IPR009057Homeodomain-like
SuperFamilySSF466894.28E-181176IPR009057Homeodomain-like
PROSITE profilePS5007117.0061777IPR001356Homeobox domain
CDDcd000865.90E-181878No hitNo description
SMARTSM003893.4E-171981IPR001356Homeobox domain
PfamPF000461.0E-152375IPR001356Homeobox domain
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PROSITE profilePS5084835.189223462IPR002913START domain
SuperFamilySSF559612.33E-23226460No hitNo description
CDDcd088751.31E-81227457No hitNo description
SMARTSM002344.7E-24232459IPR002913START domain
PfamPF018525.8E-36234458IPR002913START domain
SuperFamilySSF559616.87E-8487696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDCGDEHEGG AAADGQQRQK RQANRHTLRQ IQKLEAMFKK CPHPDENQRV ALSQELGLEP  60
RQIKFWFQNR RTQIKAHHER ADNCLLRAEN DKIRSENVTM REALKNVLCR ECSGPPISEG  120
VVGERMLRLE NARLKQEVII PRRFRGRDVA SPLDRVSRMA SKYLGRACTQ MPPPMQTTSV  180
GGMPGPLKLG AAPSHGLVDL LGGCSFSRMP PPQMPTLPPP VMEEKERPKM IETAARAMDE  240
FIRLVLAGDQ VWVKGTTGDD EWATLDVTGY DDLFSKPDAT GVFRAPDVKV EGSKAVGHVF  300
MNTLGLVEVF MNTIKWLDFF PGVVSKAHTV DVLVKDSLTE TGRSESLIMM SEELHLLTPV  360
VPTREFNILR HCKQLAQGLW AIVDVSVDAK GESSRYRRLP SGCLIADMPN GCSKVTWVEH  420
MEMTEQTLKT NVLYQNLVLS GEAFGARRWV AALQRACDRF ATFVALGAVP NGPNLNPSEG  480
GTAATAEGNK SMMKLAQRMV RGFCTGLTKS LTQRWTPMFD NTDVSFRICG RDPTGCQSSD  540
LIVFSAASSI WLPLPCEEAF ALVRDVNARC QSDLLCDGNQ VQEVSHIPTG TNPSNRIALL  600
KGMTSSKNGT LILQESSTDA SVSLLVYSPI DVHMVNAVLT GGNPSIVPLL ISGFAILPDA  660
CRPGAAGTGA STSVVAPPPA PGCIVTVAYQ LALSTSKLNA EYMDNASKFV TTTVQRIRAV  720
VDCVGP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17187A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668133e-79BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438026.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLC5Z6D60.0C5Z6D6_SORBI; Uncharacterized protein
STRINGSb10g006820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-174homeodomain GLABROUS 11