PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_17187A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 727aa MW: 79254.1 Da PI: 7.8124 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 24 | 75 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t q++ Le++F+k+++p++++r L+++lgL+ rq+k+WFqNrR++ k Oropetium_20150105_17187A 24 NRHTLRQIQKLEAMFKKCPHPDENQRVALSQELGLEPRQIKFWFQNRRTQIK 75 578899******************************************9877 PP | |||||||
2 | START | 133.2 | 2.9e-42 | 234 | 458 | 3 | 205 |
HHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 3 aeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 a +a++e+++++la++++Wvk + +d+ +k++ ++v ++e ++a+g+v+m++ lve ++++ +W Oropetium_20150105_17187A 234 AARAMDEFIRLVLAGDQVWVKGTtgddewatlDVTGYDDLFSKPDATGVfrapdVKVEGSKAVGHVFMNTLGLVEVFMNTI-KW 316 7899*******************99999988888888888899988888999999**************************.** PP -TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS START 73 detla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143 ++ ka t++v+ ++ + l m+ el +l+p+vp R+f ++R+++ql +g w+ivdvSvd + + + Oropetium_20150105_17187A 317 LDFFPgvvsKAHTVDVLVKDsltetgrsESLIMMSEELHLLTPVVPtREFNILRHCKQLAQGLWAIVDVSVDAKGESS------ 394 ********************************************************************9999877754...... PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqce 205 R ++lpSg+li +++ng skvtwveh+++ +++ l++ lv sg a+ga++wva+lqr c Oropetium_20150105_17187A 395 RYRRLPSGCLIADMPNGCSKVTWVEHMEMTEQTLktNVLYQNLVLSGEAFGARRWVAALQRACD 458 5556*****************************987789**********************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 5 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.28E-18 | 11 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 17 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.90E-18 | 18 | 78 | No hit | No description |
SMART | SM00389 | 3.4E-17 | 19 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-15 | 23 | 75 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 35.189 | 223 | 462 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.33E-23 | 226 | 460 | No hit | No description |
CDD | cd08875 | 1.31E-81 | 227 | 457 | No hit | No description |
SMART | SM00234 | 4.7E-24 | 232 | 459 | IPR002913 | START domain |
Pfam | PF01852 | 5.8E-36 | 234 | 458 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.87E-8 | 487 | 696 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 727 aa Download sequence Send to blast |
MDCGDEHEGG AAADGQQRQK RQANRHTLRQ IQKLEAMFKK CPHPDENQRV ALSQELGLEP 60 RQIKFWFQNR RTQIKAHHER ADNCLLRAEN DKIRSENVTM REALKNVLCR ECSGPPISEG 120 VVGERMLRLE NARLKQEVII PRRFRGRDVA SPLDRVSRMA SKYLGRACTQ MPPPMQTTSV 180 GGMPGPLKLG AAPSHGLVDL LGGCSFSRMP PPQMPTLPPP VMEEKERPKM IETAARAMDE 240 FIRLVLAGDQ VWVKGTTGDD EWATLDVTGY DDLFSKPDAT GVFRAPDVKV EGSKAVGHVF 300 MNTLGLVEVF MNTIKWLDFF PGVVSKAHTV DVLVKDSLTE TGRSESLIMM SEELHLLTPV 360 VPTREFNILR HCKQLAQGLW AIVDVSVDAK GESSRYRRLP SGCLIADMPN GCSKVTWVEH 420 MEMTEQTLKT NVLYQNLVLS GEAFGARRWV AALQRACDRF ATFVALGAVP NGPNLNPSEG 480 GTAATAEGNK SMMKLAQRMV RGFCTGLTKS LTQRWTPMFD NTDVSFRICG RDPTGCQSSD 540 LIVFSAASSI WLPLPCEEAF ALVRDVNARC QSDLLCDGNQ VQEVSHIPTG TNPSNRIALL 600 KGMTSSKNGT LILQESSTDA SVSLLVYSPI DVHMVNAVLT GGNPSIVPLL ISGFAILPDA 660 CRPGAAGTGA STSVVAPPPA PGCIVTVAYQ LALSTSKLNA EYMDNASKFV TTTVQRIRAV 720 VDCVGP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_17187A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT066813 | 3e-79 | BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438026.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | C5Z6D6 | 0.0 | C5Z6D6_SORBI; Uncharacterized protein | ||||
STRING | Sb10g006820.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-174 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_17187A |