PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17090A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 315aa    MW: 33171 Da    PI: 9.9648
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17090AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-19131185256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Oropetium_20150105_17090A 131 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 185
                                678899***********************************************98 PP
2HD-ZIP_I/II124.93.8e-40131221192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke 
  Oropetium_20150105_17090A 131 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLQKEL 214
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                ++Lr +lk
  Oropetium_20150105_17090A 215 ADLR-ALK 221
                                ***9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-18114185IPR009057Homeodomain-like
PROSITE profilePS5007116.536127187IPR001356Homeobox domain
SMARTSM003891.5E-16129191IPR001356Homeobox domain
SuperFamilySSF466895.43E-18129196IPR009057Homeodomain-like
PfamPF000461.0E-16131185IPR001356Homeobox domain
CDDcd000861.77E-14131188No hitNo description
PRINTSPR000314.6E-5158167IPR000047Helix-turn-helix motif
PROSITE patternPS000270162185IPR017970Homeobox, conserved site
PRINTSPR000314.6E-5167183IPR000047Helix-turn-helix motif
SMARTSM003401.0E-20187230IPR003106Leucine zipper, homeobox-associated
PfamPF021834.8E-10187221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTMPQQQQQS SLDLGLSLGL SSQGSLSSST TTAGSSGQLS PWAAALSSVV GDVMRRDQQQ  60
APPPPSAAPA DPNQGTMMTM MRASTSPDSA AALSSGDSGT KRELERTGSG SVRAGGAGSD  120
EEDGADGAGG RKKLRLSKDQ AAVLEECFKT HSTLNPKQKV ALANRLGLRP RQVEVWFQNR  180
RARTKLKQTE VDCEYLKRWC ERLADENKRL QKELADLRAL KTAAPSPSSS SSTAAQSSSA  240
AATLTMCPSC RRVATAGAGG ASANQQLQQC HRKSNNNVLP NHCQFFPGGA VDRTGHQQST  300
WSAAAAPLVT RELF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179187RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17090A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932881e-146FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811981.11e-121homeobox-leucine zipper protein HOX2-like
SwissprotQ5VPE34e-93HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U864e-93HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A3L6S0Z11e-120A0A3L6S0Z1_PANMI; Homeobox-leucine zipper protein HOX2-like
STRINGPavir.J26517.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-50homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]