PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17088A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 288aa    MW: 29687.3 Da    PI: 9.6516
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17088AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.2e-1991145256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Oropetium_20150105_17088A  91 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALATSLGLRPRQVEVWFQNRRARTK 145
                                788899***********************************************98 PP
2HD-ZIP_I/II126.31.3e-4091179190
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL kev
  Oropetium_20150105_17088A  91 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALATSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLAEENRRLGKEV 174
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLree 90 
                                +eLr +
  Oropetium_20150105_17088A 175 AELR-A 179
                                ***9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-1862148IPR009057Homeodomain-like
PROSITE profilePS5007116.48787147IPR001356Homeobox domain
SuperFamilySSF466891.75E-1889156IPR009057Homeodomain-like
SMARTSM003893.6E-1789151IPR001356Homeobox domain
PfamPF000467.6E-1791145IPR001356Homeobox domain
CDDcd000867.72E-1691148No hitNo description
PRINTSPR000312.4E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5127143IPR000047Helix-turn-helix motif
SMARTSM003406.8E-20147190IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-10147180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLGLASAS QPAISFCYSG NNNAGGVIAV PDREVSPAAE RRCGSPAGSP  60
VSSGSAGKRA AAERSAGGSG DDELDEDGGA RKKLRLSKDQ AAVLEECFKT HHTLTPKQKV  120
ALATSLGLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRWC EQLAEENRRL GKEVAELRAL  180
NAVAAAAPAP AAAPPLTTLS MCLSCRRVAP SSSSAPAPHN NATRNNVLAA HHHQHAAAPS  240
NAAAGGVGVA SSSAAAALPG HHRQFFCGFR EVGAAAYGAS SSVKAAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17088A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681201e-125EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.12e-95homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9311e-60HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-60HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A2S3HLY54e-94A0A2S3HLY5_9POAL; Uncharacterized protein
STRINGSi007082m8e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-47homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]