PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16988A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family BBR-BPC
Protein Properties Length: 360aa    MW: 39792.1 Da    PI: 9.6633
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16988AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind397.22.3e-121333591301
                  GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73 
                                md+ g+re  r+++ +y+        p+++lk++ +++++++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a
  Oropetium_20150105_16988A  33 MDNLGHREngRQRPdQYKaihtqwmmPQRQLKDHHSMNVLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAA 116
                                9999*99999****99*9*****999889******************************************************* PP

                  GAGA_bind  74 lverdnkllalllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekk 148
                                +verdn+l+al+l++++     s +++ ++ l+gtk+i+++++ls+      ql+ds+++ +re++++ea+pi++a+ ++ + k
  Oropetium_20150105_16988A 117 IVERDNALAALELARTNGFnmnSGNGFHQGPLNGTKNIHHHDELSHvqsspLQLADSPYDhVREMHISEAYPISTAPGSVGKGK 200
                                ***********999887555558899999**************999899999********9*********************** PP

                  GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226
                                k++k++++++p+++ +   +k++++++k+   ++  e+      sk+e+k++dl+ln+vs+Dest+P+P+CsCtG lrqCYkWG
  Oropetium_20150105_16988A 201 KPRKNNSQASPLKRPSGVLRKTKKTNWKNGMVPGLGEDparasaSKNEWKDQDLGLNQVSYDESTMPAPACSCTGELRQCYKWG 284
                                *****************888888888888888776544567888**************************************** PP

                  GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                nGGWqS+CCt++iS+yPLPv+++rr+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir
  Oropetium_20150105_16988A 285 NGGWQSSCCTMSISMYPLPVMPNRRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 359
                                **************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.4E-9733359IPR010409GAGA-binding transcriptional activator
SMARTSM012268.2E-16233359IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAVELGCLQP VVASVLDKIL LPPGERQNAD VIMDNLGHRE NGRQRPDQYK AIHTQWMMPQ  60
RQLKDHHSMN VLALMNEKDS AIRERDHALA EKKAAIAERD MAFAQRDAAM AERNAAIVER  120
DNALAALELA RTNGFNMNSG NGFHQGPLNG TKNIHHHDEL SHVQSSPLQL ADSPYDHVRE  180
MHISEAYPIS TAPGSVGKGK KPRKNNSQAS PLKRPSGVLR KTKKTNWKNG MVPGLGEDPA  240
RASASKNEWK DQDLGLNQVS YDESTMPAPA CSCTGELRQC YKWGNGGWQS SCCTMSISMY  300
PLPVMPNRRH ARMGGRKMSG GAFTKLLSRL AAEGHDLSTP VDLKDHWAKH GTNRYITIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16988A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141822.10.0BBR/BPC transcription factor
RefseqXP_008658294.10.0BBR/BPC transcription factor isoform X1
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A1D6NW480.0A0A1D6NW48_MAIZE; Protein BASIC PENTACYSTEINE6
TrEMBLA0A3L6DC170.0A0A3L6DC17_MAIZE; Barley B recombinant-like protein D
STRINGGRMZM2G118690_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-100basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]