PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_16959A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 625aa MW: 66930.4 Da PI: 6.9899 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 378.3 | 9.2e-116 | 225 | 597 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalk 82 v +L++cA+ +++ ++ + + +Larl e+asp g +pm+Rlaayf+eALa r +r++++ ++ +pp++ ++ ++ ++al+ Oropetium_20150105_16959A 225 VGALTACADSLATFNQDAFNYYLARLGETASPVGpTPMHRLAAYFAEALALRAVRTWPHEFDLVPPRRLTDGAavDDDDATALR 308 678****************************************************************99988776778899999 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerL 165 +++ v+Pi++f h+t N+ +l+a+eg++rvH+iDfd++qGlQWp Llq La+R++gpp ++R+Tgvg+ s++el+etg rL Oropetium_20150105_16959A 309 VLNAVTPIPRFLHFTLNERLLRAFEGHDRVHVIDFDVKQGLQWPGLLQGLAARAAGPPsHVRVTGVGE----SRQELQETGARL 388 9*****************************************************88887*********....9*********** PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 a++A+ lg+ fef+++v+ rled++l++L+vk+gE +aVn+vl+ hrll++++ + ++L + +s+ + v+ + e+e ++ Oropetium_20150105_16959A 389 AHVAAVLGLAFEFHAVVEGRLEDVRLWMLHVKRGERVAVNCVLAAHRLLRDETGAAL--ADFLAVARSTGAAVLLLGEHEDALD 470 ***************9999******************************77766665..89*********************** PP GRAS 250 sesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 ++++ +rf++al+yy+a fd++ +++lpres++r+k E++ ++rei+n+va ega+r+erhet++ Wr+r+ee+GF+++ ++e+ Oropetium_20150105_16959A 471 AGRWEARFARALRYYAAAFDAVeATGLPRESHARAKAEEM-FAREIRNAVAFEGASRFERHETFAGWRRRMEECGFRNAGIGER 553 **********************8899**************.******************************************* PP GRAS 333 aakqaklllrkvksdg.yrveeesgslv.lgWkdrpLvsvSaWr 374 +a+q +++ r++++ g y+v + ++++ l W+d+p+++vSaW+ Oropetium_20150105_16959A 554 EAMQGRMITRMFAQGGnYSVRAQGEEAItLQWMDQPMYTVSAWT 597 *************5555****88766666**************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.701 | 198 | 575 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-113 | 225 | 597 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 625 aa Download sequence Send to blast |
MLAGCSFSSS RHQMSTAQRF NIHPCGFSKR SNRGDGAAAG APRVTAAADA SRASAATCSF 60 RGHPAPPVTQ AVSWGAKPEP SSGNVAWERS RPVKRAHEED PSADEEFGGP IVRAKRTRMG 120 DEGDGEVWFR QSIAGTVQQA APGXXXXXXX XXXFLVPSAA AFPHGNMSAV AGTSLAAAKQ 180 EEFSNSPSPA SSDGGGTSAA PPRPPVVVHA RNGVPAATGE AFELVGALTA CADSLATFNQ 240 DAFNYYLARL GETASPVGPT PMHRLAAYFA EALALRAVRT WPHEFDLVPP RRLTDGAAVD 300 DDDATALRVL NAVTPIPRFL HFTLNERLLR AFEGHDRVHV IDFDVKQGLQ WPGLLQGLAA 360 RAAGPPSHVR VTGVGESRQE LQETGARLAH VAAVLGLAFE FHAVVEGRLE DVRLWMLHVK 420 RGERVAVNCV LAAHRLLRDE TGAALADFLA VARSTGAAVL LLGEHEDALD AGRWEARFAR 480 ALRYYAAAFD AVEATGLPRE SHARAKAEEM FAREIRNAVA FEGASRFERH ETFAGWRRRM 540 EECGFRNAGI GEREAMQGRM ITRMFAQGGN YSVRAQGEEA ITLQWMDQPM YTVSAWTPAS 600 DADAGGSTVS ASVSTTASHH SQQS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-61 | 231 | 600 | 26 | 382 | Protein SCARECROW |
5b3h_A | 7e-61 | 231 | 600 | 25 | 381 | Protein SCARECROW |
5b3h_D | 7e-61 | 231 | 600 | 25 | 381 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_16959A |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964401.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | K3Y201 | 0.0 | K3Y201_SETIT; Uncharacterized protein | ||||
STRING | Si008220m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63100.1 | 8e-97 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_16959A |
Publications ? help Back to Top | |||
---|---|---|---|
|