PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16901A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 768aa    MW: 82971 Da    PI: 5.1177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16901AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-10343422185
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                f +vl++    k+ +l +p +f ++          +   +    grsW+  ++ + k ++ + t+ W++F+ +n+L++gD +vF
  Oropetium_20150105_16901A 343 FTTVLSRTQLQKHFQLAIPPRFQRHLpaA-----RV-PAVLRYGGRSWTASYRGDLKLRK-LDTAAWRDFAVDNRLRVGDACVF 419
                                77889999999***********8555322.....22.3455679********66555544.6789******************* PP

                                EE- CS
                         B3  83 kld 85 
                                +l 
  Oropetium_20150105_16901A 420 ELL 422
                                *64 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.15801.3E-597206IPR000845Nucleoside phosphorylase domain
SuperFamilySSF531671.57E-348197IPR000845Nucleoside phosphorylase domain
PfamPF010485.3E-1915204IPR000845Nucleoside phosphorylase domain
Gene3DG3DSA:2.40.330.104.0E-14336432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-12338422IPR015300DNA-binding pseudobarrel domain
CDDcd100179.76E-13341421No hitNo description
SMARTSM010191.5E-4343431IPR003340B3 DNA binding domain
PROSITE profilePS5086310.955343437IPR003340B3 DNA binding domain
PfamPF023623.0E-8343422IPR003340B3 DNA binding domain
Gene3DG3DSA:3.30.70.3302.3E-7509578IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.07509583IPR000504RNA recognition motif domain
SuperFamilySSF549281.05E-11509597IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003604.0E-4510579IPR000504RNA recognition motif domain
CDDcd122693.20E-29511578No hitNo description
PfamPF000762.2E-5512571IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009116Biological Processnucleoside metabolic process
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MANECSEFLK GAPWIRYHGN YKGLHIDLVW PGKDPVLGVD SVGTVSAALV TYASIQTLKP  60
DLIINAGTAG GFKAKGASIG DVFLASDVAF HDRRIPIPVF DMYGIGARKA LETPNMLKEL  120
NLKVGKLSTG DSLDMSPYDE TAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD  180
GEKPTAEEFL QNLVAVTAAL DQAVTEIEQS AEYVSHTGHC QCPLCSASTD ARADKSASSS  240
PLPHQMETPA SGRQSNRRQL PDPCITFGIE LPDPRTAFQL EAAGVEPELP NACTKIKLIE  300
AAAVEPKPEP CDCEEDDAPL SPGDAAAADD WEISPLSGDH PFFTTVLSRT QLQKHFQLAI  360
PPRFQRHLPA ARVPAVLRYG GRSWTASYRG DLKLRKLDTA AWRDFAVDNR LRVGDACVFE  420
LLVTGAGART ETEPESEEAR NRRDSDMKEE KEMVFRVQVL RGGLPQEVTS KGDTADEPLV  480
IDHQSRKSFS FWCAMKSEWM NRVFNLLVRS VKVTNVSLTA TVQDIKEFFS FSGDIEHVEM  540
QSGDEWSQVA YVTFKDAQGA ETALLLSGAT IVDLSVIIEP APEYQPPPSA SAPPTTGTRV  600
PVGGDNVVHK AEDVVSTMLA KGFVLGKDAI GKAKSFDEKH GFTSTAGAKV ASIDKKIGLS  660
EKITTGTSMV SEKVKEMDQK FQVSDKTKSA FAAAEQKVSS AGSAIMKNRY VFTGASWVTN  720
AFNKVSKAAT DVGTMTKEKM AAEEQQKASV IDIAALDIRY IRTVKSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2h8g_A5e-9710207582555'-Methylthioadenosine Nucleosidase
2h8g_B5e-9710207582555'-Methylthioadenosine Nucleosidase
2qsu_A5e-9710207582555'-methylthioadenosine nucleosidase
2qsu_B5e-9710207582555'-methylthioadenosine nucleosidase
2qtg_A5e-9710207582555'-methylthioadenosine nucleosidase
2qtg_B5e-9710207582555'-methylthioadenosine nucleosidase
2qtt_A5e-9710207582555'-methylthioadenosine nucleosidase
2qtt_B5e-9710207582555'-methylthioadenosine nucleosidase
3lgs_A5e-9710207582555'-methylthioadenosine nucleosidases
3lgs_B5e-9710207582555'-methylthioadenosine nucleosidases
3lgs_C5e-9710207582555'-methylthioadenosine nucleosidases
3lgs_D5e-9710207582555'-methylthioadenosine nucleosidases
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16901A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0934680.0FP093468.1 Phyllostachys edulis cDNA clone: bphylf003b07, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP644155