PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16900A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB

Protein Properties

Length: 334aa MW: 35493 Da PI: 6.3651

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16900A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llv+++++ G g+W++ ++ g++R++k+c++rw +yl Oropetium_20150105_16900A 10 KGPWTPEEDKLLVEYIQKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 57 79********************************************97 PP
2	Myb_DNA-binding	56.6	5.8e-18	63	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T +E++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Oropetium_20150105_16900A 63 RGRFTDDEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 108 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.15	5	57	IPR017930	Myb domain
SuperFamily	SSF46689	4.03E-31	7	104	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-15	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-17	10	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-24	11	64	IPR009057	Homeodomain-like
CDD	cd00167	4.01E-12	12	57	No hit	No description
PROSITE profile	PS51294	27.472	58	112	IPR017930	Myb domain
SMART	SM00717	1.5E-16	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-16	63	108	IPR001005	SANT/Myb domain
CDD	cd00167	7.80E-13	65	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-26	65	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAANEAGVKK GPWTPEEDKL LVEYIQKNGH GSWRRLPKLA GLNRCGKSCR LRWTNYLRPD 60 IKRGRFTDDE EKLIIHLHSI LGNKWSSIAT KLPGRTDNEI KNYWNTHLRK KLLNMGIDPV 120 THRPRTDLNL LAGLPNLLAA ANLAGNTNWD INALKLQADA AKFQLLQGLV RAIASAATPS 180 VDLRALLAAS SSGGLSQTAI SVDQGSSRSL QYDGLLNLPA LTSVPTVSAG MSSFSGLLNG 240 FGGVAGDGLS STTELGQSGA SGSSMTAAKA PPLVAAAEEC NAADGSGGAT PCEETPASSP 300 FEGLENLNLD DLSNDDSWKD LLDQMSWFNP NEM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-30	10	112	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16900A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727665	1e-131	KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964317.1	1e-172	transcription factor MYB39
Swissprot	Q9S9Z2	6e-79	MYB93_ARATH; Transcription factor MYB93
TrEMBL	K3XXY2	1e-170	K3XXY2_SETIT; Uncharacterized protein
STRING	Si006790m	1e-171	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5529	31	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	5e-75	myb domain protein 92

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16900A

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]