PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_16880A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 24207.3 Da PI: 10.4391 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 8.1e-13 | 100 | 144 | 52 | 99 |
.EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 52 yrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 y+++s++yv+tkGW+++v++++L +gD+v+F r++++l++ +r+ Oropetium_20150105_16880A 100 YWGSSQSYVMTKGWSRYVRDKRLAAGDTVTFC---RDGARLYIDCRRR 144 5*******************************...4667788888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-5 | 36 | 62 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.81E-14 | 40 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-11 | 99 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.6E-10 | 100 | 144 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.57E-8 | 100 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MALTIALAAD SSIAGSGGGG GGLLAAARVA DEGGKQVHRR ERLFEKVVTP SDVGKLNRLV 60 VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY WGSSQSYVMT KGWSRYVRDK 120 RLAAGDTVTF CRDGARLYID CRRRGKPAAV AAPVRVPAQA AACSLLFGDG GNKVQQRLAP 180 PAAVVDDEEL ARQRGRRLVR LFGVDLELRA AATEPMLLDL QL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-18 | 41 | 144 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_16880A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q5VS55 | 4e-31 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 7e-24 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_16880A |