PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16860A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 408aa    MW: 47176.9 Da    PI: 8.1659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16860AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1744.3e-54752091129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknrat 78 
                                +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++        +++++e+yfFs++dkky+tg+r+nrat
  Oropetium_20150105_16860A  75 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcrlggPGEEDQNEYYFFSHKDKKYPTGTRTNRAT 157
                                69****************************.99**************95355554223366799******************** PP

                        NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                ++g+Wkatg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Oropetium_20150105_16860A 158 AAGFWKATGRDKPIYANkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 209
                                ***************9856777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-5766238IPR003441NAC domain
PROSITE profilePS5100557.7375238IPR003441NAC domain
PfamPF023651.6E-2776208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
ERERKEREYT HGATTGRRES ISLLSPGSRK SSLHLARSLD FYKVFHHISL ILDSNYKITV  60
ALTGSMAQQQ QQPLVPPGFR FHPTDEELVD YYLRKKVASR RIDLNVIKDV DLYKIEPWDL  120
QEKCRLGGPG EEDQNEYYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKP IYANKQRQLV  180
GMRKTLVYYK GRAPNGHKSD WIMHEYRLET NENGPPQASA SSHYYSIYRW VVCRVFKKRL  240
PTTRRESDPD APCWYVDDDG AFMHDLNSPM IGIMPPHHHG MALHQEQHLH MLNNTYKREL  300
KLQFQMPTHH HAFSTVVPHE LESHSFHSLL VSPDHQSNVQ LIENAVDQVT DWRVLDKFVA  360
SQLSHDATKS VNYTDEGDIV QINEKQEVAN NDYASTSTSS SQVDPWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-487523915169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16860A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.10.0NAC domain-containing protein 105
SwissprotQ9FWX22e-98NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0K1TPD70.0A0A0K1TPD7_PANVG; Secondary wall NAC master switch
TrEMBLK3XY210.0K3XY21_SETIT; Uncharacterized protein
STRINGPavir.Da02426.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-90NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]