PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16846A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CO-like | ||||||||
Protein Properties | Length: 244aa MW: 26509.1 Da PI: 6.8312 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.5e-06 | 7 | 42 | 6 | 41 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg.Htvvp 41 C + + + fC+++ lC C + H g H++ p Oropetium_20150105_16846A 7 CHSCAAHAAVVFCFNDAAALCVHCDAAAH-GlHRRAP 42 99999999*********************.7799877 PP | |||||||
2 | CCT | 57.7 | 4.1e-20 | 192 | 235 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+a+lRY eK+k+R F K+i Y+sRK++A++R+RvKGrF+k++ Oropetium_20150105_16846A 192 RERAKLRYWEKKKNRSFCKQIMYASRKVRADERKRVKGRFAKAS 235 99****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.7E-4 | 2 | 43 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.869 | 2 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.47E-5 | 16 | 43 | No hit | No description |
Pfam | PF06203 | 2.4E-14 | 192 | 234 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.483 | 192 | 234 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAPPYACHSC AAHAAVVFCF NDAAALCVHC DAAAHGLHRR APLCDLCGAA PAAVRCDASF 60 MICAGCRPPP AGNLTGGGVA QYTGYPSPAE LVRLLSVEAP PQRQEEFDAW LANQLLLIDD 120 DDPPIISSGT TCDDVTMAVA KIEKLLAGYG PVSTDEDDDQ MLFPPPAADQ TTTPQQQSIT 180 MTEELKKKRE ERERAKLRYW EKKKNRSFCK QIMYASRKVR ADERKRVKGR FAKASDHSAS 240 SHD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16846A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659424.2 | 1e-63 | zinc finger protein CONSTANS-LIKE 15 | ||||
TrEMBL | A0A1D6NY20 | 3e-62 | A0A1D6NY20_MAIZE; Zinc finger protein CONSTANS-LIKE 12 | ||||
STRING | Pavir.J13712.1.p | 1e-52 | (Panicum virgatum) | ||||
STRING | Pavir.J21550.1.p | 9e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14109 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 8e-10 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16846A |