PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16831A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 526aa MW: 57858.2 Da PI: 5.8046 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.4 | 1e-21 | 24 | 85 | 68 | 128 |
NAM 68 yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 y+ g+r+nr+t++gyWkatgkd+ + s+ g+l+g+kktLvf++grap+g++t W+mheyr Oropetium_20150105_16831A 24 YPGGHRSNRSTAAGYWKATGKDRLIRSRpAGTLIGIKKTLVFHRGRAPRGRRTAWIMHEYRT 85 67799**********************989999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.813 | 1 | 106 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-30 | 6 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-9 | 30 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSSSPAAAPL PVGFRFRPTD EELYPGGHRS NRSTAAGYWK ATGKDRLIRS RPAGTLIGIK 60 KTLVFHRGRA PRGRRTAWIM HEYRTTEPQL HHSQDGSFVL YRLFNKHEEE TNLEDAESPS 120 TSSPAHLKMM KSENSAHLLT SVDKNDPTAP QVTTRSSFDI NSFLVYHEKD PVLDVLAHVP 180 SLQPDKTLDG FPTITSPMRP YTDHPFLANA EGQDLSEYLD SIIACQEMKG ALSCTTGDAE 240 MNPTAMLMPS GSSNDKVVDD TGAAHCSSGT KILQKDTCDV SHGTDVAYSA SAHLSHLYHH 300 SLLHSTSAEM EQPYIAAQFS AGSWTPYPQH LFDDVVDPYG SNMTSSDAFD GLEGLVDEPM 360 MQQFADSNVQ QGTAARRIRL VHSVQKATVT EPVLTSHLES EDEAGSSYRG SEDEAGSSYS 420 VGNLSTIHDK DYTNLISQTV AGEATHAQDG RFLPPQVDYL VEVTEKSRNF SFDVHALSTY 480 LQMISCFTKP ISSRDSNRKT QSRVRMSVMT YRTVAVCLEN LPIED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-20 | 14 | 107 | 77 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16831A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304841.1 | 1e-145 | NAC domain-containing protein 69 isoform X2 | ||||
TrEMBL | A0A1E5USQ9 | 1e-147 | A0A1E5USQ9_9POAL; Protein NTM1-like 9 | ||||
STRING | GRMZM2G163914_P02 | 1e-131 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 9e-31 | NAC domain containing protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16831A |