PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16815A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 531aa    MW: 56813 Da    PI: 5.5902
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16815AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.82e-551505282374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn......ssee 77 
                                ++lL  cA a+++g+l++aq+lL  l elas +g++++Rlaa+ + AL    +    ++  +++++    + ++      + ++
  Oropetium_20150105_16815A 150 EHLLNPCAAAIEAGNLARAQHLLYVLGELASFSGEANHRLAAHGLLALVLSHLPaaVGQAAAASIQIPYLKCSTpafpcvEPRR 233
                                699********************************************9765444224444455555544444445577653344 PP

                       GRAS  78 laalkl.fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg... 153
                                + a  + f+evsP++ + + +aN aI + + +   +++ +iD ++s+G+QWp+Ll+aL+  p  + pps+ +T+ g++++    
  Oropetium_20150105_16815A 234 FRAALIkFHEVSPWFALPNTLANAAIAQLATRGrhQMIRVIDVGVSHGTQWPTLLDALTRVPrgSAPPSVWLTVAGAAATPpap 317
                                4443347********************987655479***********************76644889*******9997766888 PP

                       GRAS 154 ..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                   +        +L ++A+++++++ ++      +++l  e+L+ +pgE+l+ +l+++l +        ++e+ +vL  v+sl+
  Oropetium_20150105_16815A 318 fsASPPGYDSSPQLLQYARSINLDLAIDQ-----TQCL--ETLHASPGEVLVACLQFRLNHAT------ADEQAAVLGKVRSLN 388
                                887888899999*************9997.....5666..99***************999997......334579********* PP

                       GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrer 318
                                P++vv++e +    ++s   +f+  le+ +++++s+e+ +   + +er+++E e  g  ++   a ++          e+Wr+r
  Oropetium_20150105_16815A 389 PELVVLAELDGGG-GSSMSGEFAARLEMLWSFLESTEVAFKGSDaDERRVMEVE-AGTTLMTTTARRQGG-AIAVDGRESWRAR 469
                                ********99886.77899*****************999876665888888888.888888888888777.6778889****** PP

                       GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslv.lgWkdrpLvsvSaWr 374
                                + +aGF++++++ +a+++ak+ lrk++  g+++       g++v l Wk++p+ ++S Wr
  Oropetium_20150105_16815A 470 MAAAGFEEAQFGGEAVETAKAQLRKYD-GGWELVppsPATGAAVwLRWKRQPVSFCSLWR 528
                                ***************************.67788755434666666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.077123505IPR005202Transcription factor GRAS
PfamPF035146.8E-53150528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MRREQEDQEP HEQHDAPDWL DDSAAFFYAD LDPDFEFEGY DYEWLSESMA PEQHDTCTTM  60
AAETLPCQAI SLPPGPGPVA GCAALSTPHD LGGPKSPEKH AAAPPGQSQR NLAGPEPDDK  120
ARASCTRKSS KKRSGKGGTA GLDRDTRWAE HLLNPCAAAI EAGNLARAQH LLYVLGELAS  180
FSGEANHRLA AHGLLALVLS HLPAAVGQAA AASIQIPYLK CSTPAFPCVE PRRFRAALIK  240
FHEVSPWFAL PNTLANAAIA QLATRGRHQM IRVIDVGVSH GTQWPTLLDA LTRVPRGSAP  300
PSVWLTVAGA AATPPAPFSA SPPGYDSSPQ LLQYARSINL DLAIDQTQCL ETLHASPGEV  360
LVACLQFRLN HATADEQAAV LGKVRSLNPE LVVLAELDGG GGSSMSGEFA ARLEMLWSFL  420
ESTEVAFKGS DADERRVMEV EAGTTLMTTT ARRQGGAIAV DGRESWRARM AAAGFEEAQF  480
GGEAVETAKA QLRKYDGGWE LVPPSPATGA AVWLRWKRQP VSFCSLWRPA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16815A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801770.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A2S3H4830.0A0A2S3H483_9POAL; Uncharacterized protein
STRINGSb02g039060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-79GRAS family protein