PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16780A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24261.7 Da PI: 9.4279 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.9 | 8.4e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRrng+lKKA+E+SvLCdaev +i+fs++gklye++s Oropetium_20150105_16780A 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVGLIVFSTKGKLYEFCS 59 8***********************************************96 PP | |||||||
2 | K-box | 92.6 | 6.6e-31 | 85 | 172 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 +++e++ +e+ +Lk++++ Lq++qR+llGe+L+sL+ keLqqLeqqL+ slk+iRs+Kn+l++++i++lqkkek l e+n L Oropetium_20150105_16780A 85 IEDQENWGEEYVRLKSKLDALQKSQRQLLGEQLDSLTTKELQQLEQQLDCSLKHIRSRKNQLMFSSISDLQKKEKLLTEQNGVL 168 56789****************************************************************************999 PP K-box 95 rkkl 98 +k + Oropetium_20150105_16780A 169 QKLM 172 8755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.763 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.91E-42 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-28 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.196 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVGLIVFST KGKLYEFCSR 60 ESMEGILERY QRYSFEERAM MDPSIEDQEN WGEEYVRLKS KLDALQKSQR QLLGEQLDSL 120 TTKELQQLEQ QLDCSLKHIR SRKNQLMFSS ISDLQKKEKL LTEQNGVLQK LMEAEKEKNN 180 ALMRGEQNGA TTSSPSPATA MSNWWSTRGV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-20 | 93 | 168 | 22 | 97 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-20 | 93 | 168 | 22 | 97 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-20 | 93 | 168 | 22 | 97 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-20 | 93 | 168 | 22 | 97 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16780A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460989.1 | 1e-119 | MADS-box transcription factor 18 | ||||
Swissprot | A2YNI2 | 1e-116 | MAD18_ORYSI; MADS-box transcription factor 18 | ||||
Swissprot | Q0D4T4 | 1e-116 | MAD18_ORYSJ; MADS-box transcription factor 18 | ||||
TrEMBL | A0A1L5YFA1 | 1e-120 | A0A1L5YFA1_PANVG; APL3 | ||||
STRING | Pavir.Ba00457.1.p | 1e-121 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-68 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16780A |