PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16705A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 22967.9 Da PI: 8.2129 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.8 | 4.7e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++dCvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv+Gavg+ Oropetium_20150105_16705A 2 SCNGCRVLRKGCSEDCVLRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFLTAVPETQRPAVFQSLLYEAAGRTINPVSGAVGL 85 6*********************9999777889**************************************************** PP DUF260 80 ilklqqqleqlkaelall 97 + +++++l+q+++e++l+ Oropetium_20150105_16705A 86 LGSGSWHLCQAAVETVLR 103 ************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.297 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEDCVLR PCLQWIESAE AQGHATVFVA KFFGRAGLMS FLTAVPETQR 60 PAVFQSLLYE AAGRTINPVS GAVGLLGSGS WHLCQAAVET VLRGGGIRPL PELDGGGGGG 120 GGAAADDTDR RDTFAFTARR TVGCSTFSAA KRATRIAAPE RAPSCDLGLW LSPESPPTTP 180 GERRPRKRPG TPSMNSEDSV TTTSSGGGGG REPELLNLFV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16705A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069813 | 1e-121 | AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958181.1 | 1e-110 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 1e-76 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | K3ZWM9 | 1e-109 | K3ZWM9_SETIT; Uncharacterized protein | ||||
STRING | Si031011m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 9e-61 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16705A |
Publications ? help Back to Top | |||
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