PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16666A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 328aa    MW: 36496.9 Da    PI: 6.9538
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16666AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.94.1e-121132645373
                       GRAS  45 fteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                                ++e+L arla+s++++ykal+++e +    se l+++++++e++P++kf+++ aN aI e v+ge+r+HiiDf isqG+QW++L
  Oropetium_20150105_16666A   1 MVEGLVARLASSGNSIYKALKCKEPK---GSELLSYMHFLYEACPYFKFGYMSANGAIAEVVKGEDRIHIIDFHISQGTQWISL 81 
                                689**********************9...9****************************************************** PP

                       GRAS 129 lqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlql 210
                                lqaLa+Rp+gpp +RiTg++++ s   +   le +g+rL+++A  ++vpfef++ va + +d+e+e+L++ pgEa+aVn+ l+l
  Oropetium_20150105_16666A  82 LQALAARPGGPPFVRITGIDDSFSAyaRGGGLELVGKRLSHIAGLCKVPFEFHA-VAISSNDIEVEHLNIIPGEAVAVNFTLEL 164
                                *********************777688999************************.68899************************ PP

                       GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                h+++de+vs++++rd++L+lvkslsPkv+++veqe+++n+++F++rf+e+l+yy+a+f+s++  lpre++eri++E+++l+rei
  Oropetium_20150105_16666A 165 HHVPDETVSTANHRDRILRLVKSLSPKVLTLVEQESNTNTAPFAQRFAETLDYYTAIFESIDLALPREDKERINMEQHCLAREI 248
                                ************************************************************************************ PP

                       GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                vn+vaceg+er+erhe ++kW++rl++aGF+p pls+ +++++k+ll+ ++ + y++ e+ g l+lgWk+rpLv+ SaW
  Oropetium_20150105_16666A 249 VNLVACEGEERVERHELFGKWKARLMMAGFRPSPLSSLVNATIKTLLESYSPN-YKLLERGGVLYLGWKNRPLVVSSAW 326
                                ***************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.7441308IPR005202Transcription factor GRAS
PfamPF035141.4E-1181326IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVEGLVARLA SSGNSIYKAL KCKEPKGSEL LSYMHFLYEA CPYFKFGYMS ANGAIAEVVK  60
GEDRIHIIDF HISQGTQWIS LLQALAARPG GPPFVRITGI DDSFSAYARG GGLELVGKRL  120
SHIAGLCKVP FEFHAVAISS NDIEVEHLNI IPGEAVAVNF TLELHHVPDE TVSTANHRDR  180
ILRLVKSLSP KVLTLVEQES NTNTAPFAQR FAETLDYYTA IFESIDLALP REDKERINME  240
QHCLAREIVN LVACEGEERV ERHELFGKWK ARLMMAGFRP SPLSSLVNAT IKTLLESYSP  300
NYKLLERGGV LYLGWKNRPL VVSSAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-613732783375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16666A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958142.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLK3ZS380.0K3ZS38_SETIT; Uncharacterized protein
STRINGSi029418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-173scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]