PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16654A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 329aa    MW: 35853.2 Da    PI: 6.0153
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16654AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-1859112356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++++eq+e Le  F+++r++ + ++ +LA+ lgL+ +qV vWFqNrRa++k
  Oropetium_20150105_16654A  59 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAALGLDPKQVAVWFQNRRARHK 112
                                45589***********************************************99 PP
2HD-ZIP_I/II114.28.3e-3759149292
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kkrrls+eqv++LE sF+ee+kLe+ rKv+la +Lgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+d+   ++++Le+ev 
  Oropetium_20150105_16654A  59 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAALGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDTAILHKCHLENEVL 142
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelk 92 
                                +L+e+l 
  Oropetium_20150105_16654A 143 RLKEKLV 149
                                ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.11554114IPR001356Homeobox domain
SuperFamilySSF466891.96E-1657113IPR009057Homeodomain-like
SMARTSM003891.1E-1657118IPR001356Homeobox domain
CDDcd000862.39E-1559114No hitNo description
PfamPF000469.1E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1759112IPR009057Homeodomain-like
PRINTSPR000313.9E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000313.9E-594110IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEQQHQLFPS SFVDSSLLLT TNGAAQGEER PRARRRRRRA ARCGGGGDGG GEADAGDPKK  60
RRLSDEQVEM LELSFREERK LETGRKVHLA AALGLDPKQV AVWFQNRRAR HKSKLLEEEF  120
AKLKQAHDTA ILHKCHLENE VLRLKEKLVV AEEELTRLKS AGSHAVSGDA ADVMGRVVCG  180
GSPSSSFSTG TCHQQQPGIG GVDRLGDDDL IYVPDVADYA YADNSMPEWF GLYGLIVLRL  240
KEKLMVTEEE LTRLKSAGSH ATAGTSWAAR VVCSGSPSSL FSTGTCHQQP AGGGGVDRLG  300
DEDLIYVPDV ADYAYADNSM AEWFSYMD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12938RPRARRRRRR
23341RRRRRRAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16654A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657887.16e-93PREDICTED: homeobox-leucine zipper protein HOX14
SwissprotQ7XI858e-83HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A1Y0YXT21e-94A0A1Y0YXT2_9POAL; Homeodomain leucine zipper protein class 1
STRINGPavir.J09638.1.p2e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-30homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]