PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16564A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 446aa    MW: 48448 Da    PI: 6.7104
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16564AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.63e-101574312374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 +lLl+cAeav+++ l +a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ lp+  +s   + +++ a+++++
  Oropetium_20150105_16564A  57 LTLLLRCAEAVAADRLPEARDLLPEIAELASPFGSSPERVAAYFGDALCARVVSSYLGAYSPLPAAVQS---TRRVAGAFRAYN 137
                                579***************************************************999999999888887...788899999*** PP

                       GRAS  86 evsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL 165
                                 +sP+++f+h+taNqaIl+a++      +r+H+iD+d++qGlQWp L+++LasR+    slRiTg+g+    s + le+tg+rL
  Oropetium_20150105_16564A 138 TLSPLVRFAHFTANQAILRALDDGggevDRLHVIDLDVMQGLQWPGLFHTLASRR-RLRSLRITGLGA----SVDVLEATGRRL 216
                                *********************9777778999***********************6.569*********....9*********** PP

                       GRAS 166 akfAeelgvpfefnvl......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                a++A+++g+pfef+++      va++ + l  ++ + +++Ea++V++++  h l+d ++s +     +++l+ksl+P+++++ve
  Oropetium_20150105_16564A 217 ADLAASVGLPFEFRPVegkighVADAAALLGHHRRQQQEEEATVVHWMH--HCLYDVTGSDAG----TVRLLKSLRPRLITIVE 294
                                ***************855544434444444444446666*********9..888888888888....***************** PP

                       GRAS 244 qeadhnsesFlerflealeyysalfdsleak...lpres....eerikvErellgreivnvvacegaerrerhetlekWrerle 320
                                q++ + +++Fl rf+eal+yysalfd+l  +   +++e+     er+ vEr+llg ei+n+va  g +r+ + + +e+W++ l+
  Oropetium_20150105_16564A 295 QDLGRHGGDFLGRFVEALHYYSALFDALGDGaggAGEEDekqaAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWSDELR 377
                                ****************************55524433333555689***********************998887.9******** PP

                       GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +aGF+pv+l  + a+qa+lll +++ +gy++ e++ +l lgWkd +L+++SaW+
  Oropetium_20150105_16564A 378 RAGFRPVSLAGSPATQARLLLGMYPLKGYTLVEDNWCLRLGWKDLSLLTASAWE 431
                                *****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.06830411IPR005202Transcription factor GRAS
PfamPF035141.0E-9857431IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLQGVMSRTP ATDAMKAKRP ASPAEEEEEE EQGRARRKRL VAAAEGEGPE TRGLRLLTLL  60
LRCAEAVAAD RLPEARDLLP EIAELASPFG SSPERVAAYF GDALCARVVS SYLGAYSPLP  120
AAVQSTRRVA GAFRAYNTLS PLVRFAHFTA NQAILRALDD GGGEVDRLHV IDLDVMQGLQ  180
WPGLFHTLAS RRRLRSLRIT GLGASVDVLE ATGRRLADLA ASVGLPFEFR PVEGKIGHVA  240
DAAALLGHHR RQQQEEEATV VHWMHHCLYD VTGSDAGTVR LLKSLRPRLI TIVEQDLGRH  300
GGDFLGRFVE ALHYYSALFD ALGDGAGGAG EEDEKQAAER HAVERQLLGA EIRNIVAVGG  360
PKRTGEVRVE RWSDELRRAG FRPVSLAGSP ATQARLLLGM YPLKGYTLVE DNWCLRLGWK  420
DLSLLTASAW EPVDDAATAA ARHES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1416243224379Protein SCARECROW
5b3h_D1e-1416243224379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16564A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.10.0scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ11e-153SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A3L6QTZ50.0A0A3L6QTZ5_PANMI; Scarecrow-like protein 23
STRINGMLOC_62589.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-134GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]