PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16555A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 449aa MW: 48672.6 Da PI: 7.0783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16555A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.1	1.7e-53	33	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyW Oropetium_20150105_16555A 33 LPPGFRFHPTDEELVVHYLKKKAASMPLPV-TIIAEVDLYKFDPWELPEKASFgTEQEWYFFSPRDRKYPNGARPNRAATSGYW 115 79**************************.89***********544432677*********************** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+++++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Oropetium_20150105_16555A 116 KATGTDKPIMASggSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 162 *******9777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-60	26	172	IPR003441	NAC domain
PROSITE profile	PS51005	61.475	33	233	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	34	162	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-60	221	233	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MMRSMESTDS SSGSVPPQRT QQPGPVAVPA PYLPPGFRFH PTDEELVVHY LKKKAASMPL 60 PVTIIAEVDL YKFDPWELPE KASFGTEQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT 120 DKPIMASGGS REKVGVKKAL VFYRGKPPKG LKTNWIMHEY RLTDAASXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXSLIYI GIDWLNYWPG VTDRVLVSVS QLDDWVLCRI YKKINKHGVG 240 DQLRNMECGG EGSVEDATVS AYQSHAAAVA GMTLGGANYT SLLHHHHEDN FLDGLLTTVE 300 DGGGLSAAGA ASLSQLAAVT RASNTAVTKQ LLAPPAAATP FNWLDASSSG IAILPPAKRY 360 HGFSRDNADG STSLSSPAAE GNQLPAGSID GAGGSGTAAI PTTFLNPXXX XXXXXXXXXX 420 XXXXXXXXLP PETAFQQPYQ LSGVNWNP*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MMRSMESTDS SSGSVPPQRT QQPGPVAVPA PYLPPGFRFH PTDEELVVHY LKKKAASMPL  60
PVTIIAEVDL YKFDPWELPE KASFGTEQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT  120
DKPIMASGGS REKVGVKKAL VFYRGKPPKG LKTNWIMHEY RLTDAASXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXSLIYI GIDWLNYWPG VTDRVLVSVS QLDDWVLCRI YKKINKHGVG  240
DQLRNMECGG EGSVEDATVS AYQSHAAAVA GMTLGGANYT SLLHHHHEDN FLDGLLTTVE  300
DGGGLSAAGA ASLSQLAAVT RASNTAVTKQ LLAPPAAATP FNWLDASSSG IAILPPAKRY  360
HGFSRDNADG STSLSSPAAE GNQLPAGSID GAGGSGTAAI PTTFLNPXXX XXXXXXXXXX  420
XXXXXXXXLP PETAFQQPYQ LSGVNWNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-63	33	233	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-63	33	233	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-63	33	233	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-63	33	233	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-63	33	233	17	165	NAC domain-containing protein 19
4dul_B	2e-63	33	233	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16555A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085989	1e-143	BT085989.1 Zea mays full-length cDNA clone ZM_BFc0095M07 mRNA, complete cds.
GenBank	BT086467	1e-143	BT086467.1 Zea mays full-length cDNA clone ZM_BFc0169O24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802635.1	1e-154	NAC transcription factor NAM-B2-like
Swissprot	A0SPJ9	1e-142	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A3L6E021	1e-157	A0A3L6E021_MAIZE; NAC transcription factor ONAC010
STRING	GRMZM2G179885_P02	1e-151	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-80	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16555A

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]