PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16526A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 730aa    MW: 80219.8 Da    PI: 7.9789
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16526AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18264364199
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                                f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v
  Oropetium_20150105_16526A 264 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDITGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTV 346
                                89**************************555566778***************9989999999***9.***************** PP

                                EEEE-SSSEE..EEEEE-S CS
                         B3  81 vFkldgrsefelvvkvfrk 99 
                                +F++ +  e++lv++++++
  Oropetium_20150105_16526A 347 TFSRLD-PEGKLVMGFRKA 364
                                ***765.777788777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-31256366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-20261363IPR015300DNA-binding pseudobarrel domain
CDDcd100175.11E-22262363No hitNo description
PfamPF023622.1E-15264363IPR003340B3 DNA binding domain
SMARTSM010192.8E-21264365IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138264365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MAPPTTVWSP SMHVPQNVAD RKEAPKNWRP PAQISSQWRQ NNMWHMSSLQ SDLQQRLAYE  60
FDRPSGSEKL LPGRTFIHGP ERKFDDMHDR PTTPASINHL MREREGPSSM DSYTFALYHR  120
EGPHPSDPSH NGVENESLPS RRMGIPDAAT DAGFKLDSHH PSDHPSLSVG LPSNYAPANG  180
PKEHMRIAPN QNQVQMASPS LQKQFYPPNV SGFNEFQAQM RSGNGRPRMD AKARSQLLPR  240
YWPRITDQEL QHLSGDSHSV TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF PPISQPEGLP  300
LKVQDITGKE WIFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR LDPEGKLVMG  360
FRKASNVSSE QDQTTKPANG VPASSEANGK GPAPDLSPSA AVSRQNKVNI ESNSSSPVEQ  420
ATVKTEKGGS SQKESPGTGQ SSPVPFKRKA TSVGQKIKRL RMDNEESMEL KITWEEAQEL  480
LRPPPKAPSI VVVDGHEFEE YEEPPILGRK TYFVTDQSGC SCEPAQEISM EELAELIPIK  540
SGLGGVKKSK AKIEGDTIDA SDGLDTLANL AILGEGEALP SQPTTKHPRH RPGCSCIVCI  600
QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM LRREKRKDTD SPRRKEAGQS SDTVSQSGSG  660
PQATSASTSG SPQKADPNAD GPEDTAEDHK KSSPVKNHID LNIQPDRDDE QSPKADAAGA  720
TRLLRDNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-652433712131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16526A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699489.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1E5VPN00.0A0A1E5VPN0_9POAL; B3 domain-containing protein
STRINGPavir.Bb03074.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-119HSI2-like 1