PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16497A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 35036.4 Da PI: 6.6693 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 14 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 rg+WT+eEde+lv ++k++G g+W+t ++ gRt++++k++w+++ Oropetium_20150105_16497A 14 RGPWTPEEDEKLVAYIKKHGQGNWRTLPKNAAiaarlPGRTDNEIKNYWNTH 65 89********************9987666555555555************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 5 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.092 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.75E-17 | 9 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-16 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.91E-17 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGRAPCCDKS GLKRGPWTPE EDEKLVAYIK KHGQGNWRTL PKNAAIAARL PGRTDNEIKN 60 YWNTHIRKRL LRMGLDPVTH APRLDLLDLS SLIKPHASAV AAAYYPTQGD LDTLRALEPL 120 ARYPDLLRLA SALLSGTPAL ATDHHQHQQL LPWLLQAQMT QQAAASAMAQ QQVAPPATTQ 180 QAADQFMQQQ QQQAAACQMP GLVHASLTMQ QQQQQLQTTA CHSVPPPPTS YIDDDGSLLD 240 MPALMQMVQQ QHSDASNLQQ QWSSTVTSSN NNCNLGGSGV STPSSSPVVA RLSSNSTTTA 300 NDDAGALFNM QLSDLLDVSD YM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16497A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 7e-78 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670489.1 | 1e-105 | transcription factor MYB41 | ||||
TrEMBL | A0A3Q8VSA6 | 1e-105 | A0A3Q8VSA6_MAIZE; MYB family transcription factor | ||||
TrEMBL | M0XRT9 | 1e-105 | M0XRT9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_62436.1 | 1e-106 | (Hordeum vulgare) | ||||
STRING | GRMZM2G031323_P01 | 1e-105 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 6e-49 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16497A |