PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16430A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 18834.8 Da PI: 6.5022 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.7 | 1.1e-06 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+k F++ + H+r+H Oropetium_20150105_16430A 65 YSCPVCDKYFKTEKAVHGHMRSH 87 99********************9 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg F ++ L H +H Oropetium_20150105_16430A 110 YVCEHCGSQFESRQALGGHRASH 132 9***************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 60 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.7E-7 | 64 | 132 | No hit | No description |
Pfam | PF12171 | 8.3E-7 | 65 | 87 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 9.3E-4 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.045 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.7E-7 | 110 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 110 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.136 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MNGATQVFFI GVAYGHLLSS VAGGSGGGDE PQHPWHPSSV HGADATPPQH KRRVASSLKS 60 EEGHYSCPVC DKYFKTEKAV HGHMRSHPDR SWRGMEEPDP TVVDERQYSY VCEHCGSQFE 120 SRQALGGHRA SHNGKMGCFW LSRQPTAVAA NEPRAVLPFD LNDPVPEQED E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16430A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439063.2 | 8e-49 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A446YZG5 | 3e-50 | A0A446YZG5_TRITD; Uncharacterized protein | ||||
STRING | Pavir.J33608.1.p | 4e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 2e-12 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16430A |