PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16427A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 28325.4 Da PI: 9.4549 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.5 | 4e-47 | 14 | 141 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 pGfrFhPt+eel+++yLk+ v+gkkl++ ++i++v++y+++Pw+Lp ++ +e+ewyfF++rd+k++ g r++r+t++g+Wka Oropetium_20150105_16427A 14 PGFRFHPTEEELLQFYLKQVVHGKKLKF-DIIPTVQLYRHDPWELPGLARIGEREWYFFVPRDRKQQPgGGRPSRTTERGFWKA 96 9**************************9.99***************8778899**********99985389************* PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl Oropetium_20150105_16427A 97 TGSDRAVRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 141 ********98777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.985 | 12 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.22E-55 | 13 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-25 | 14 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDRRGGGAPE LDLPGFRFHP TEEELLQFYL KQVVHGKKLK FDIIPTVQLY RHDPWELPGL 60 ARIGEREWYF FVPRDRKQQP GGGRPSRTTE RGFWKATGSD RAVRCAADPK RLIGLKKTLV 120 YYEGRAPRGT KTDWVMNEYR LPDHAGEPLS LPKEDMVLCK IYRKAVSLKE LEQRVAMEEL 180 ARASATATPS ASHNTGSPAD SISSLPQLEV AKHQLQVGAE WMQDPFLTQL RSPWMEGWSP 240 YYASVLNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-47 | 1 | 164 | 3 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16427A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811820.1 | 1e-139 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 9e-92 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A2S3HG66 | 1e-138 | A0A2S3HG66_9POAL; Uncharacterized protein | ||||
STRING | Si006994m | 1e-138 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-82 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16427A |
Publications ? help Back to Top | |||
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