PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16269A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 307aa    MW: 32683.7 Da    PI: 6.6767
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16269AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.98.8e-16245280134
                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ k+
  Oropetium_20150105_16269A 245 CHHCGISAsaTPMMRRGPDGPRTLCNACGLMWANKN 280
                                *****88888**********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.142108143IPR010399Tify domain
SMARTSM009799.4E-13108143IPR010399Tify domain
PfamPF062004.0E-13111142IPR010399Tify domain
PROSITE profilePS5101713.334170212IPR010402CCT domain
PfamPF062039.3E-16170212IPR010402CCT domain
SMARTSM004012.9E-10239296IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-10243279No hitNo description
Gene3DG3DSA:3.30.50.107.7E-14244280IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.52E-11244280No hitNo description
PROSITE patternPS003440245272IPR000679Zinc finger, GATA-type
PfamPF003201.0E-13245280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERPQ QPAEHDAPPP AIVAPAVDQL AAAAVEAESM PQYLDQQQLL  60
QQQGHEQEEG GVTGEHLPMD ADAAAAAAAA ASGMQMDQHG VMVPTTVPPV SSNQLTLSFQ  120
GEVYVFDSVS PDKVQAVLLL LGGRELNPGL GGAASSSAAY SKVRLNFPHR VASLMRFREK  180
RKERNFDKKI RYTVRKEVAL RMQRNRGQFT SSKPKVDEAA AELTAADGSP NWGALEGRPP  240
SAAECHHCGI SASATPMMRR GPDGPRTLCN ACGLMWANKN GSAIVAPDVE QENPTAGMAN  300
GHELST*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16269A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753285.11e-132GATA transcription factor 20
SwissprotQ5Z4U51e-131GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0A9EJS61e-143A0A0A9EJS6_ARUDO; Uncharacterized protein
STRINGBRADI1G33980.11e-129(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-68ZIM-LIKE 2