PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16258A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 25405.6 Da PI: 9.5413 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3e-18 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F++++ +s++e+ +LA++++Lt rqV vWFqNrRa+ k Oropetium_20150105_16258A 93 RKKLRLTKEQSALLEDTFRSHNILSHAEKHHLARRVNLTPRQVEVWFQNRRARTK 147 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.8 | 2.2e-36 | 93 | 181 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +kk+rl+keq++lLE++F++++ L++ +K++lar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL++e Oropetium_20150105_16258A 93 RKKLRLTKEQSALLEDTFRSHNILSHAEKHHLARRVNLTPRQVEVWFQNRRARTKLKQTEVDCELLKRCCKSLSDENQRLKREL 176 69********************************************************************************** PP HD-ZIP_I/II 85 eeLre 89 eL++ Oropetium_20150105_16258A 177 VELQR 181 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 82 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-19 | 87 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.844 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-14 | 91 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-14 | 93 | 150 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 93 | 147 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-8 | 149 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.1E-14 | 149 | 193 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MLCSSSCMEE EDLGAWLGLG IGSGCGLRGS HGERWPSLQF PNNQEDETMR GRDHKKAAVN 60 NTTDQKGGRG KRLKAAIAID DNQDDADANG CMRKKLRLTK EQSALLEDTF RSHNILSHAE 120 KHHLARRVNL TPRQVEVWFQ NRRARTKLKQ TEVDCELLKR CCKSLSDENQ RLKRELVELQ 180 RSAAAARRHH VQFPRAADAS GTTSICPSCA KVTVTSGGET SKRSSHSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16258A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966133.1 | 2e-76 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | Q5Z6F6 | 2e-56 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A368QXX7 | 6e-75 | A0A368QXX7_SETIT; Uncharacterized protein | ||||
STRING | Si007238m | 4e-75 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-44 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16258A |