PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16102A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NF-YB | ||||||||
Protein Properties | Length: 256aa MW: 27082.5 Da PI: 6.787 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 144.1 | 3.4e-45 | 31 | 125 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 reqd+++Pianv+rim+ vlP +aki++dake+vqecvsefisf+t+ea+d c+ e+rkt++++d+l a+ lGf+dyv pl++ Oropetium_20150105_16102A 31 REQDQLMPIANVVRIMRGVLPPHAKIADDAKEVVQECVSEFISFITGEANDWCRGEHRKTVTAEDILSAMDRLGFDDYVSPLRA 114 89********************************************************************************** PP NF-YB 86 ylkkyrelege 96 y+++ re+eg Oropetium_20150105_16102A 115 YVRRMRECEGR 125 ********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.7E-43 | 28 | 125 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.13E-33 | 33 | 129 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.1E-23 | 37 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.3E-11 | 64 | 82 | No hit | No description |
PRINTS | PR00615 | 2.3E-11 | 83 | 101 | No hit | No description |
PRINTS | PR00615 | 2.3E-11 | 102 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAEPKTPTID AAAATEPPPI PAARTEPVVI REQDQLMPIA NVVRIMRGVL PPHAKIADDA 60 KEVVQECVSE FISFITGEAN DWCRGEHRKT VTAEDILSAM DRLGFDDYVS PLRAYVRRMR 120 ECEGRGGGSG GAHQTRAAHH GRGGSVPMIQ GLQTHTQPAA FISCTAALSH RYGVVAPPLY 180 QDSRSAAPYS GVARRVVLGD EPSSPMAVAS YGGGPLPLTQ GNHGGRVCNA DEVSSSPNGE 240 LAAAEATSQR PHYPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 7e-44 | 28 | 121 | 4 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16102A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q84W66 | 1e-45 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-43 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16102A |