PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_16055A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 466aa MW: 51897.8 Da PI: 4.4888 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.2 | 8.1e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp G++F+P+d+el+ + L+k+ ++ + e +++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+ Oropetium_20150105_16055A 58 LPSGVKFDPSDQELLLHLLAKHGKSGIkahpfIA--EfipTVEEEdGICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKR 138 699************8888776544434444422..22223555546**********.677888899***************** PP NAM 76 ratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 r+++ + +W++tgk+k+vl+ +g++ g+kk++v+y + r k+ekt+Wvmh+y+l Oropetium_20150105_16055A 139 RKINtddlaDVRWHKTGKTKPVLV-DGKHLGCKKIMVLYmsTVRGGKAEKTNWVMHQYHL 197 *74444666899************.999***********6556888999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-37 | 44 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.75 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 466 aa Download sequence Send to blast |
MNRASWIIDS QRFAKKIKSP SGSLDPSKQK WMSNPTMECK KCGHVIDNDD VVQPWPGLPS 60 GVKFDPSDQE LLLHLLAKHG KSGIKAHPFI AEFIPTVEEE DGICYTHPQK LPGVKQDGSV 120 SHFFHRTFKA YNTGTRKRRK INTDDLADVR WHKTGKTKPV LVDGKHLGCK KIMVLYMSTV 180 RGGKAEKTNW VMHQYHLGTG EDEKDGEYVV SKLFYQYKSG EKNVQGLPAA DGVESVVEAN 240 VTILPPLPSE EDNDVNEEVM HSEADVPILP PLHSEEDNDV NKEVMHSEAG VPVLPPLPSE 300 EDNDINEEVV HNPEHNPYQV NGTYEINVED NVAEEVAALA PSEKPEDQEN SQPQDPKLWE 360 GDSQFELLDS QQLADGIALC DEFLLSQSQT SCGDGDEPKA VKPRLAVYAQ LPPEDLKKDL 420 EECQRLEPLD NGNLEADVTN EFRLSQIEFS QDSFSGWAGG KMIDD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_16055A |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965197.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-136 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A368QV69 | 0.0 | A0A368QV69_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Da01643.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-139 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_16055A |