PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16044A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 382aa    MW: 42158.3 Da    PI: 6.9164
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16044AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-1181119442
                                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                                 k++rr+++NReAAr+sR RKka+ie+Le    +L    
  Oropetium_20150105_16044A  81 HKVQRRLAQNREAARKSRIRKKAYIEQLESSRTKLAHLE 119
                                599*************************98655555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-975127No hitNo description
SMARTSM003380.001878131IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.17480124IPR004827Basic-leucine zipper domain
PfamPF001707.5E-982121IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-782124No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
PfamPF141442.6E-29164239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MATAPGMAET EPGRVCSPWA QFENWGDSGI VVTSPLTETT STDVDDSGDK HNAQMGGGSS  60
AHRVAVKMDP SVVSNERHGD HKVQRRLAQN REAARKSRIR KKAYIEQLES SRTKLAHLEQ  120
ELHRARQQGM FIASGCSGDH GYSTGGALAF DVEYARWLDE HQRHMSDLRV ALAAQMSEGD  180
LRVVVDAAMS HYDQAFRLKS LATRGDVFHV MSGMWLSPAE RLFMWLGGFR PSEVLRAVAA  240
QLEQPTEQQL VGVCNLQQTA MQAEDALSQG MDVLQQTLAE TLASASAAAA ATXXXXXXXX  300
XXXXXPDDSV TNYVGQMAVA MAKLGTLENF IRQADLLRQQ TLEQMRRILN TRQSARALLV  360
ISDYFSRLRA LSSLWLARPR D*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16044A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229877.21e-178transcription factor TGAL3
RefseqXP_025812128.11e-178transcription factor TGAL3-like
SwissprotQ5Z6N91e-169TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0A9BRJ30.0A0A0A9BRJ3_ARUDO; Uncharacterized protein
STRINGBRADI1G43900.11e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-112TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]