PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_15985A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 369aa MW: 39428 Da PI: 8.7207 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.6 | 8.6e-06 | 197 | 214 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+ CH+GpC+ C Oropetium_20150105_15985A 197 CGNHACKDMCHPGPCGDC 214 ****************99 PP | |||||||
2 | zf-NF-X1 | 24.6 | 5.4e-08 | 255 | 272 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC Oropetium_20150105_15985A 255 CGLHRCKVTCHEGECPPC 272 ****************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.15E-6 | 121 | 193 | No hit | No description |
PROSITE profile | PS50016 | 8.689 | 128 | 190 | IPR019787 | Zinc finger, PHD-finger |
Gene3D | G3DSA:3.30.40.10 | 5.5E-7 | 129 | 188 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE pattern | PS01359 | 0 | 131 | 187 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.553 | 131 | 188 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 1.38E-9 | 187 | 232 | No hit | No description |
SMART | SM00438 | 6.8E-4 | 197 | 216 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.3E-4 | 197 | 214 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.10E-12 | 245 | 285 | No hit | No description |
SMART | SM00438 | 9.3E-5 | 255 | 274 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.1E-6 | 255 | 272 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
THPPHRRRPR RPNHGNNNNR RNPPAPQDHS NGTGYHPSGQ PPAGTQEHSS GVGRYRPGPP 60 PAAEEHRGDA GQRRRGPRQE RPRPGNNAPA PGAAPAAKAP VSVPAAAGGD GAVPQLVQEI 120 QDKLARGAVE CMICYDMVRR SAPVWSCASC YSIFHLPCIR KWARSPASVA DASAEAAASA 180 SWRCPGCQTV CGHTLTCGNH ACKDMCHPGP CGDCELMPGK VTTCHCGKTR LEGIRSSCLD 240 PIPTCDKVCD KKLPCGLHRC KVTCHEGECP PCLVRVEQRC RCSSSGRINS GVGSMLASFS 300 ATAVTARPAW RPYSLISLVP VVELLSHHHY LVEHQLHHAH TTVLSPNHAV IQPLILAILG 360 TVRLVLCQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_15985A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005518 | 8e-72 | AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10. | |||
GenBank | AP014962 | 8e-72 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 8e-72 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150167.1 | 8e-51 | NF-X1-type zinc finger protein NFXL1-like | ||||
Refseq | XP_020150168.1 | 8e-51 | NF-X1-type zinc finger protein NFXL1-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10170.1 | 2e-36 | NF-X-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_15985A |