PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15765A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 314aa    MW: 34122.2 Da    PI: 5.8432
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15765AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072502832154
                                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Oropetium_20150105_15765A 250 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 283
                                569*****************************87 PP
2ELK30.76.9e-11204225122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELKh+L+++Y+++L+++++E++
  Oropetium_20150105_15765A 204 ELKHELKQGYREKLVDIREEIM 225
                                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193882IPR005540KNOX1
PfamPF037901.5E-164178IPR005540KNOX1
SMARTSM012562.3E-2593148IPR005541KNOX2
PfamPF037911.0E-16101147IPR005541KNOX2
SMARTSM011883.8E-4204225IPR005539ELK domain
PROSITE profilePS5121310.196204224IPR005539ELK domain
PfamPF037899.9E-7204225IPR005539ELK domain
PROSITE profilePS5007111.758224287IPR001356Homeobox domain
SuperFamilySSF466897.7E-16226290IPR009057Homeodomain-like
SMARTSM003893.3E-10226291IPR001356Homeobox domain
CDDcd000861.22E-11227288No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24231288IPR009057Homeodomain-like
PfamPF059203.3E-18244283IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAFQYPDHAL GMDAAASVAA NPGFGAGVGG GVGGGGWERE KAAIAAHPLY ERLLEAHVAC  60
LRVATPVDQL PRIDAQIAAR PPPMAAAAAA AAVGGAQSGG EELDLFMTHY VLLLCSFKEQ  120
LQQHVRVHAM EAVMACWELE QTLQSLTGAS PGEGTGATMS DDEDNQVDSE SNMFDGNDGS  180
DGMGFGPLML TDGERSLVER VRQELKHELK QGYREKLVDI REEIMRKRRA GKLPGDTAST  240
LKAWWQAHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPA SSSSDKSKRK  300
RNTAGDGNAE QSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280300RKRNWHSNPASSSSDKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15765A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414380.0AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965737.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLK3XYC40.0K3XYC4_SETIT; Uncharacterized protein
STRINGPavir.J37473.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-143KNOTTED1-like homeobox gene 3