PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15764A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 226aa MW: 23698.2 Da PI: 10.521 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.1 | 4.5e-09 | 171 | 213 | 21 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+aL++e++ l+k + +l+se+ Oropetium_20150105_15764A 171 RPRKKMRLPEIQQMVRSLSVENDALRQEMKALQKACTALTSEN 213 89**************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.7E-6 | 171 | 210 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MTAAVDSEAC AVVATAADII CSLRAADLAG WTPPWRNKQQ APADPSAGNE GDAQDQLLAW 60 PAVARGKRSR SRRGSSPXXX XXXXXXXXXX XXKRKKASRA RGSPPSPLDY SAGSGASSSG 120 AEDGGFCSPP PPVVMSSAGG GGLRAEPASK VGLPGCRPIL PVPPPRPAGQ RPRKKMRLPE 180 IQQMVRSLSV ENDALRQEMK ALQKACTALT SENGKLEVNK DRSVE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | KRSRSR |
2 | 170 | 176 | RPRKKMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15764A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054292 | 1e-50 | BT054292.1 Zea mays full-length cDNA clone ZM_BFb0217J09 mRNA, complete cds. | |||
GenBank | KJ728326 | 1e-50 | KJ728326.1 Zea mays clone pUT6607 bZIP transcription factor (bZIP93) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811831.1 | 5e-67 | collagen alpha-1(I) chain-like | ||||
TrEMBL | A0A2S3HHK3 | 1e-65 | A0A2S3HHK3_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G050912_P01 | 6e-53 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3790 | 29 | 51 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15764A |